ndufb5 (LOC107659010,LOC107709185,LOC107590679,LOC107578042)


Basic Information

Item Value
gene id ndufb5
gene name LOC107659010,LOC107709185,LOC107590679,LOC107578042
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13693377 ~ 13696789 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241043.1
ATCAGTGAAGGCTTTTGCTCACGCGCTTCCCACAACAGTCATGGCCGGCATGAGCCTTCTGCGGACGGCGGCTGCTCTTACAGCCCGATTAAACCCGCTGAAACGATCGTGCCAGTCCGCCAATCTGCTCTCCAGGACCGTTGCACGTTCAGGACAAGttgTTGTCCGTCATGGGAGCCATGGGAAAAGGATGTTTATCATCAGGTCCACTGACTTCTATGACAAAAGATTTCTTTCCTTGCTGAGATTTTACGTTCTTCTCACAGCCATCCCCGTGGCGGCTCTTGTGAcgtttgttaatattttcatagGAGAATGTGAGCTGACCGAGATTCCCGAAGGATACGAACCAGAGCATTGGGAGTACTACAAGCATCCCATCACCCGTTGGATTGCTCGTACCTTATATGACAGCCCAGTAAAGGACTATGAGAAAATGATGGCACTTATCCAAATAGAGACTGAGAAATCTGAAATGAGACAACTAGAAAATGAAGTCCGCCGACAAATGAGAACAAAAGGAGATGGACCCTGGTTCCATATTAAGACACCTGATAGCCGTCTTATCAACAACGGCATCAAGGCAACCCCTGATAACTAGGAGTGGTCATGCGTACCTGTCCAAAATATTCAGTCATTAtacaatgtataatgtataatgtattgttataaattaaaaaaaaacatgtttctttttcttttttttgcctctCGCACCAATAAACTAAGGATTATAACTAG

Function

NR:

description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K03961 NDUFB5; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241043.1 True 741 mRNA 0.44 6 13693377 13696789

Neighbor

gene id symbol gene type direction distance location
actl6a actl6a,LOC107659031 coding upstream 2427 13684429 ~ 13690950 (+)
si:ch211-201h21.5 si:ch211-201h21.5,LOC107659008,LOC107731846,LOC107590672 coding upstream 38221 13652396 ~ 13655156 (+)
zgc:172121 zgc:172121,LOC107659029,LOC107692348,LOC107732016,LOC107590642,LOC107731828 coding upstream 49104 13638994 ~ 13644273 (+)
atp1b1a NA coding upstream 85863 13598539 ~ 13607514 (+)
rpl5b rpl5b,rpl5,LOC107659024,LOC107590646,LOC107732018,LOC107566486,LOC107692344,LOC103368809 coding upstream 150810 13536511 ~ 13542567 (+)
usp13 usp13,LOC107659032 coding downstream 1003 13697792 ~ 13722434 (+)
pde6d pde6d,LOC107590678,LOC107591155 coding downstream 117127 13813916 ~ 13819919 (+)
phb2b phb2b,LOC107692360,LOC107591156,LOC108427714 coding downstream 123330 13820119 ~ 13823792 (+)
ptmaa NA coding downstream 157453 13854242 ~ 13857900 (+)
dlg1a dlg1,LOC107659037,LOC107738730,LOC108427717,LOC108271975 coding downstream 171088 13867877 ~ 13971903 (+)
G44998 LOC102783117 non-coding upstream 31280 13661812 ~ 13662097 (+)
LOC122346715 NA non-coding upstream 35611 13656192 ~ 13657766 (+)
G44997 bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 non-coding upstream 42494 13650115 ~ 13650883 (+)
LOC122346508 NA non-coding upstream 98776 13589885 ~ 13594601 (+)
G44899 NA non-coding upstream 275537 13417558 ~ 13417840 (+)
G45056 NA non-coding downstream 139818 13836607 ~ 13836819 (+)
G45070 NA non-coding downstream 163466 13860255 ~ 13860609 (+)
G45075 lrrc7,LOC107659039,LOC107709201 non-coding downstream 295956 13992745 ~ 13996966 (+)
G45084 LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 non-coding downstream 319646 14016435 ~ 14128344 (+)
LOC122347615 NA non-coding downstream 432558 14129347 ~ 14131078 (+)
G44887 NA other upstream 283465 13394229 ~ 13409912 (+)
G44645 NA other upstream 584011 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 611258 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 887677 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 1166420 12521773 ~ 12526957 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 275384 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1539376 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1662072 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1868192 15564981 ~ 15566668 (+)
G45894 NA other downstream 3489919 17186708 ~ 17187308 (+)

Expression


Co-expression Network