LOC122346435 (wdr78,LOC107590676)


Basic Information

Item Value
gene id LOC122346435
gene name wdr78,LOC107590676
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15334030 ~ 15340136 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241047.1
CTTCAGCGCCGGTCTGTTGTCCTGCGTGTAACTTCAAACCATCAAGCTAACCGCTTCTATATTATTTttcgtttttaaaaaagtgtgaaacatGTCTAACACAACAGTCAAACAGAAGATAACCGCTCTGAAAGTCGCCAAGTCATCCAAAACACTGAACGTATCGTCTGGAGTATTTCGAGTGAATCAAAGCATCACGAAGACCATCAACCCCTCAGTCAGTGGGAAGAGCTTCAGCTCAGCAAGTGACAGTAAAGTTCTGGACAAGAGCTTGGCCCAAACACCAAAAACAATGTACAGGTATTGgGTGTTTGATGAACATGGGCAGGACGTCACTCCTCACCCATTATACAATCCAGATCCTGGGGTTTTACAACCTAAACATGGAAAAATATTTCCTGCACATGATACGTCATGGACTACCATGGCAGACTTTCCTTCTGTAGCCCTACAGACGACCAACGCAAGCTTCACTGGACCATTTACAAAGTCTTTTTTCCGGAGCGTTTCAGCATCCAGATCAAGCCAGACGACAGAGTCAGTGACTGATGAAACTAAAGACTTGTTAGTGAAACCTGACTTGTCCAGCAGTCTTTCAGATGTTCGGGCTTGTAGAGAGGAGGTGAAAAAGCAGGTCAGGGAGGACGTAATGGACAGGGTGATGGATTCTTACCTGACTGAGACGGAGACCATCTGGATGCTGGATATTCCTGCAGTGTCTGTATCGGCAGATTCAGAGGATGCGGAAGCAGTCAAgGAAAGAAACAATGCTTACACGGAGCTGTGCAAAAACAGACAGGGCAATGATATGTATGTGGAGCGATCGATGCAAACATTCAATGACGCACCAAAGACGAAGGAGGTCCAAAGCGATAGCATTACAATGGTAGACAAAgCTGTCATGTCCACCCCCTGGGACATGTATGATTCATTCTGCAATAACGCTGATGTCAGTGAAAACACTGTGGTCTCCGCTGAAGGAAATAAGGCGTCTGTCCCAGACTCCTCCTCAATGAGTCACCTCCCGAACCCTAGCGGTCCTGACCAGAGCATGTCTGTGTTCAGCACCACTAGTACAGTCAGTGGCTCAAGCACTCCTCTAGAAAAGATGACTTGTGTGCTTCCGGTGGAGGAAGAGCCAGGCCTCGAGCTGATCTTACAGTCAGACAAATTCAAGCAGGATCTGGCTGTGATGGAAAGAGCGGTTCTGGCTAACATCTTCCAGCCTAAGCTTGCTGCATACAGACAGCTGCCTGTAATAGAGGACCCAGACTGTgcgcagacacagacagaggagGAAAGCTGGACAGAGCCGTCTAAAAACTCCCTGAGCCCATTCCTTGAGTATCTCTGGGTCTTTAAGTGTGAACTCACCAAGGGACGAAACGTTAGCTGTATGACTTTGAACAAGAAAAACACGGATCTTCTTGCTGTGGCATACGGACAGCTTGATTTCAAAGATCAGAAACCCGGACTTGTGTGCTGCTGGTCTTTGAAGAATCCCATGTGGCCTGACCGACTCTTTCATTGTGAGAGTGGAGTCACTGCACTGGATTTCTCAGCTTGTAATGCTCATCAGCTGGCGGTAGGAATGTATGATGGGACCATTGCCATCTATAATGTGCAGACCACAGAACAGACACCCATCATAGACAGCAGTGCCTGCGCCAATATGCACACGTGTCCGGTGTGGCAGCTCAGATGGGTTGATCATGACACAGGTCTGGCTGGAGAGGATAAAGGGGAAATGCTTATCTCTGTATCAGGGGATGGAAGAATCAGCAAATGGATCCACTACAAAGGCCTGGAATGTGTTGATCTGATGAAACTAAAGTCGTCTAACATGATGGCCAACAACCAGCAGTGGAACCCGAAGATTTTATCCCTGGCTCCAGGGCTGTGCTTCGATTTCCATCCTAATGATTCAAAGATCTACCTGGCCGGAACAGAGGAAGGATGTATTCACAAGTGTTCTTATTCATATAACGAGCAATTCTTGGAAACTTACAAAGCCCACACAGGTCCGGTATATAAGGTTGCGTGGTCACCATTCTGTCCTGACGTTTTCCTAAGCTGTTCTTCAGATTGGACTATTTATCTGTGGAGGCAGGAACTTCTGAACCCCGTGCTGGGTTTCACCTCGGATCAGACGGTCGTGTTTGATATCGTGTGGTCCCCTCACTGTGCTACCGTCTTTGGAGTTGCTCGTGAGGGCAAGGTGGAGATCTGGGACCTGAGAGCAAGCGTTCTGGACCCGACGATTGTGAGCGTGACCAATCCGGGAGTGAACCCGACGGCTCTCCTGTTCAGCCCTGAGACGGACTGTGTCCTGGCGGGGGACAGTGAAGGCCAGGTCTCTGTGTACAAGCTGAAGAACCTGCCTGCCGGAGACAGCACACAGGTGGAGGCGTTGGAGGATGTAATTCGGACCACACTGTCCAGTCAACACACATTAGGAAAGACTGACAGAGATGCATAGGAGGGTCAGGCTGTTTGTCTTTACCACTCCATCATCATAATTTATACTCTCTGGCAGACTGAGCGACTCCATTACAGCACACCGCCTGCTTGCGCTTCTTTGTAGGAATAAATATActcttacaaaaacaaatatactcttttcaacatcattttgtaaattatttaattatttatatattgtaaaaaaaaagaatttggaGATAGCAGGCTTGTTGAATTACAAACTATCTATTCTGGAAACATTTTGGCATTCAGGAGTTGATcggtaaatatttttaatactgtattGTCATAcgatattgttttgtttttcgtgAAAACCACAGAcagtaagtgtttgttttatggtaATGGACGGACAGCTTTATTACCACTTGGCCGCCACACGTTACATCTTATCTACAACACGAAGACCACATCACACTTTTAGA

Function

symbol description
wdr78 dynein intermediate chain 4, axonemal

NR:

description
PREDICTED: WD repeat-containing protein 78

GO: NA

KEGG:

id description
K24723 DNAI4, WDR78; dynein intermediate chain 4, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241047.1 True 2912 mRNA 0.47 17 15334030 15340136

Neighbor

gene id symbol gene type direction distance location
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding upstream 149364 15162993 ~ 15184666 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding upstream 179408 15148130 ~ 15154622 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding upstream 325961 14964912 ~ 15008069 (+)
dock7 dock7,LOC107591182 coding upstream 376827 14915866 ~ 14957203 (+)
LOC122347452 LOC107692384,LOC107739088 coding upstream 543838 14780926 ~ 14790192 (+)
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding downstream 305884 15646020 ~ 15657188 (+)
LOC122347276 sumf1,LOC107673603,LOC107585117,LOC107667304 coding downstream 343430 15683566 ~ 15691034 (+)
LOC122347482 tsfm,LOC107711018,LOC107585120 coding downstream 355490 15695626 ~ 15697839 (+)
LOC122346397 pomgnt1,LOC107675946,LOC107692396 coding downstream 405938 15746074 ~ 15753735 (+)
LOC122347155 pik3r3,LOC107594617,LOC107717145,LOC107692397,LOC106584012,LOC107731623,LOC107556985 coding downstream 473786 15813922 ~ 15941551 (+)
LOC122347324 NA non-coding upstream 100976 15231824 ~ 15233054 (+)
LOC122347325 NA non-coding upstream 102284 15230821 ~ 15231746 (+)
G45371 NA non-coding upstream 219379 15099837 ~ 15114651 (+)
G45364 mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 non-coding upstream 247501 15010246 ~ 15086529 (+)
G45333 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 non-coding upstream 520351 14805305 ~ 14813679 (+)
LOC122346981 NA non-coding downstream 121826 15461962 ~ 15462420 (+)
G45421 NA non-coding downstream 146238 15486374 ~ 15487892 (+)
G45447 NA non-coding downstream 170604 15510740 ~ 15577035 (+)
G45456 NA non-coding downstream 240126 15580262 ~ 15583406 (+)
G45470 uroc1 non-coding downstream 297810 15637946 ~ 15638524 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 89750 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1353744 13972173 ~ 13980286 (+)
G44887 NA other upstream 1924118 13394229 ~ 13409912 (+)
G44645 NA other upstream 2224664 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 2251911 13080565 ~ 13082119 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 18725 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 224845 15564981 ~ 15566668 (+)
G45894 NA other downstream 1846572 17186708 ~ 17187308 (+)
G46022 NA other downstream 2655055 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 2816519 18156655 ~ 18166242 (+)

Expression


Co-expression Network