gadd45ab (gadd45ab,gadd45a,LOC107555372,LOC107678351,LOC107670797,LOC108272203)


Basic Information

Item Value
gene id gadd45ab
gene name gadd45ab,gadd45a,LOC107555372,LOC107678351,LOC107670797,LOC108272203
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10943752 ~ 10946264 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241054.1
CGAGCGTCACTCTAACAGTCCCCTCAGCGCGAGCGGTGTGTCTGTGCCTCTGGACCGGCCGCAGGATTACATGCTAACGGAGAACAGTGCGCGACACATACTAAGGATATCCGTTCCTATTGTGCAATATGACTTTTGAAGAACCGTGTGGAGACAACGCAACTGaaagaATGGACTCGGTTGAGAAGGCACTGGAAGAGGTCCTGACTGCTGCGTTACCTCAGGGTTGCATCACTGTGGGAGTCTATGAGGCGGCGAAGTCACTGAACGTGGACCCAGACAACGTGGTTTTATGTCTGCTGGCCACAGACGAGGAGGATGTGAAAGACGTCGCGCTTCAGATTCATTTTACCTTGATTCAAGCGTTCTGCTGCGAGAACGACATCAATATCTTACGAGTGAACAACATGAGACGTCTGGCAGAGATCCTGGAGGGCGTGAAACCGGGAGGAGAGTCGATGGACCTCCACTGCGTATTAGTCACCAATCCACAGTCGTCCACGTGGAAGGATCCAGCCCTCGGCAAACTGAACCGATTCTGCAGAGACAGTCGGGGATTGGACCAGTGGGTGCCGGTCATCAATCTCCCCGAGCGATGAACGGAAGCGGGCCGATAATGTCGGAGCTTTTCGCAGGCTCCTGCGCTAGATTTGTGTTCCTCTTTGGATGAAGCCTAACGCCTCTGAGAATGAGACACGAGGGGGATTAACGAAGTGCAATGGATGATGTTTTTCCAGCAAACCCGATGATCAAAAGTGTGGGTTTTGCTTGTCGGCCGATTCATGGTTTCACCTCAGAGCAGGAAGAATGACTCAGCACTGTCAGTGCTGCCAGGGAGCGACAAGTTTGCCGGGAACCGTACAGGAAACTGAATCACACATGCTGGATTAGAGCACTAAGAGTGAGCTGAGAGACTGGAATCTACTCACTGAAATGTGATCAGACTGTCAGAGGTCAGATGGACCGTTAAATGATGGACATGTCCCTTTTTTGCAGACATGCTGCAATTTTAAAAGGCCCTAACTTATGGTGTTAATGCTGTcttgtattataattatttaaaagggaaTATACTACAGTCTTTACTGATTTAGATAGAAATTagttacttgttttttttttgattcaacCGTTCTGCTCcgtattttaaactgttaattttaaacttaatttattgattgtatttatattgttgcGTTCATtgtcagaaatgtaaaaaataaaatgtctgaatCGTGTGCATCAGTGTTTCTGCCTGTGAAATGCATagctttatgtatttattgcgTTCATGCATCGTGTCTTAAAACACTGCACACGATATATCGGTACCATATCCGTTatcagattttaaatgcaatctCTAATtgccatatttttacatttttagatgtttattcataacaaatgctaataaattaactgcaatgttaaaatgta

Function

symbol description
gadd45ab Predicted to be involved in regulation of cell cycle. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including axis; choroidal fissure; eye; pancreas primordium; and pronephric mesoderm. Orthologous to human GADD45A (growth arrest and DNA damage inducible alpha).
gadd45a Enables kinase binding activity; protein N-terminus binding activity; and protein dimerization activity. Involved in several processes, including cellular response to mechanical stimulus; negative regulation of protein phosphorylation; and positive regulation of stress-activated MAPK cascade. Located in cytoplasm and nuclear speck.

NR:

description
growth arrest and DNA damage-inducible protein GADD45 alpha-like

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241054.1 True 1440 mRNA 0.45 4 10943752 10946264

Neighbor

gene id symbol gene type direction distance location
znf648 LOC107678353,LOC107555382,LOC107733900,LOC107719322,LOC107660466,LOC107564440 coding upstream 13319 10922668 ~ 10930433 (+)
glulb glulb,LOC107555380,LOC107733907,LOC107704001,LOC107757425,LOC107660462,LOC107569358,LOC102795441,LOC105019150 coding upstream 39727 10901006 ~ 10904025 (+)
LOC122347357 LOC107733903,LOC107704004,LOC107555376,LOC107569359 coding upstream 85742 10838448 ~ 10858010 (+)
stx8 stx8,LOC107704006,LOC107555374,LOC107733906,LOC107569362,LOC107660464,LOC107757428 coding upstream 364947 10523980 ~ 10578805 (+)
mchr1a mchr1a,LOC107704000,LOC107728182,LOC107733891,LOC107561025,LOC107659856 coding upstream 513214 10427591 ~ 10430538 (+)
tgfbr3 tgfbr3,LOC107749982,LOC107555391,LOC107564431,LOC107675425,LOC107678350,LOC107730687 coding downstream 126911 11073175 ~ 11162716 (+)
znf644b znf644b,LOC107749981,LOC107555369,LOC107675435,LOC107730700,LOC107564430 coding downstream 233564 11179828 ~ 11200924 (+)
barhl2 barhl2,LOC107675428,LOC107678352,LOC107555373,LOC107564632 coding downstream 308345 11254609 ~ 11258567 (+)
LOC122346915 kyat3,ccbl2,si:ch73-97h19.2,LOC107698888,LOC100332215 coding downstream 495847 11442111 ~ 11447927 (+)
dzip1l LOC107679858,LOC107756183,LOC107593178,LOC107751311,LOC107577891 coding downstream 845406 11791670 ~ 11801796 (+)
LOC122346901 NA non-coding upstream 280063 10662120 ~ 10663689 (+)
G44252 ntn1a non-coding upstream 343688 10599748 ~ 10600064 (+)
G44248 NA non-coding upstream 360071 10582349 ~ 10583681 (+)
G44245 NA non-coding upstream 389157 10521974 ~ 10554595 (+)
G44246 LOC107733892,LOC107555367,LOC107703995 non-coding upstream 420530 10516890 ~ 10523222 (+)
G44297 NA non-coding downstream 45106 10991370 ~ 10991602 (+)
G44298 NA non-coding downstream 50144 10996408 ~ 10997516 (+)
G44301 LOC107577034,LOC107675434,LOC107564434,LOC107730699,LOC107678357,LOC107733908 non-coding downstream 54427 11000691 ~ 11001355 (+)
G44440 NA non-coding downstream 269783 11216047 ~ 11216274 (+)
G44443 NA non-coding downstream 275365 11221629 ~ 11222047 (+)
pik3r6a zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC105903457 other upstream 51292 10882960 ~ 10892460 (+)
LOC122347096 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 other upstream 60853 10870378 ~ 10882899 (+)
atad5b LOC107578257,LOC107710017,LOC107669538 other upstream 820227 10116617 ~ 10123525 (+)
dgke dgke,LOC107669536,LOC107710025,LOC107710026,LOC107669537,LOC107553311,LOC107591925,LOC107701198 other upstream 903388 9979865 ~ 10040364 (+)
LOC122346828 mcrip1,LOC107710264,LOC107553315,LOC107710031,LOC107591941,LOC108424716 other upstream 995823 9944518 ~ 9947929 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other downstream 469009 11415273 ~ 11420330 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other downstream 1055883 12002147 ~ 12010539 (+)
G44588 NA other downstream 1141135 12087399 ~ 12092455 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other downstream 1208004 12154268 ~ 12159899 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other downstream 1575509 12521773 ~ 12526957 (+)

Expression


Co-expression Network