sned1 (sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186)


Basic Information

Item Value
gene id sned1
gene name sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12806500 ~ 12835911 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241060.1
TGAGCGGCACGGAGCACAGCAGCTCTAGAGCACCCAGCAGCACACAGAATGCAAGGAATCTACCCCCTTGTTATAGAACAACAGCCCAAGTACCAGGGCTGAGAGAAGATCTGAGAGGAAACAAAGGGTGGAATTAGAAACCAAAAGAGGAAAATTACAGAAAGAGGGAGAAGAAAGACAAGGAGGATCACTGGTTGGGCATTTCACACTTGGGTTTAGAGTTGTCTTGTTGCCCTTTCTGAGTGTCCGGAATATTAGTCCTCTCCTCTCCATCCCTGTGCAGACAAGGTCATGGGGTGGCTGAGGAGGCTGGTGCTCTCCATGTGCATGCTTCTTATTTTGCTTCATGGCGTGGAGCCGGTTGTACCCCTGGAGGAGTTCTACCCATTTGGCCTGGATGAGGGTGACTCCCAGACCATCGAGCAAGATGATGGAGGATCAGGTCTGGTAGCGATCTCTGTGGCTTTCCCTTTCTTCGGAGAACGGCACACTGGACTCTATGTCAACAACAATGGCCTGGTGTCTTTTCTGAGGGAGGTTTCCCAGTTCACGCCTGTTGCATTCCCCATTGCTGGAGACCGCAGAGTTGTGGCTCCGTTCTGGGCAGATGTAGATAACCGACGGGCAGGAAAAGTTTTTTATCGAGAGACCAAAGATCCTGCCATCCTGAGAAGAGCCACTACAGACATGAATCGCTACTTTCCTGAGTTCCCTATGTTCGTCACTACATGGGCGCTGATTGCTACCTGGCATCAAGTCACATTTTTTGGTGGCAGCTCAATAACTCCGGTCAATACATTTCAAGTAGTTCTCATCACAGATGGTGAGCTCTCCTTCACCATCTTCCAGTACCACAATATTTCTTGGACAACAGGGATGCATGCTACCAGTGGTGGTGACCTAGCCGGCTTGGGAGGCATAGCTGCACAGGCAGGTTTTAATGCTGGTGATGGGAGGCGCTATTTCAATATCCCTGGCTCTCGGACAGATGATATTGTTGAAGTTGAAACCACCACAAATGTGGGATATCCTGGTCGTTGGGTCTTTCGTATTGATGATTCTCAGGTGCAAGTGGGCAGCTGCAATGACTCAGCTTCGGTCTGTGCTAACTTAAGGCCCTGTCAAAATGGTGGCCGCTGCATTGATGACTGCATAACTGGAAATCCATCTTTTACTTGCTCGTGTTTGGCTGGCTTCACTGGACGCAGGTGCCAGATAGAGGTCGATGAGTGCTCTTCATACCCCTGTCAGAATGGGGGCACATGTGTGGACAAGATCAACCACTTCATCTGCCTATGTCCAGTGGGATTCGTAGGGACAACATGTGAAACAGACATAGACGAGTGCCAGGAGACCCCATGCCTCAATGGAGCACAGTGCATACAGGGTGTAGGCAACTTCACCTGCGTATGCCAAGCAGGTTACACTGGGTTCCTATGCGAGTCAGATATCAATGAGTGTGCATCCATGCCATGTTTGAATGGAGGTGTGTGTGAAGACCTGGTGAATAACTACACCTGCACCTGTACAACAAACTTCACTGGAAGCCACTGTGAGACAGAGATAGTTGTCATGAAAAATTCTTCTACTACTGATGCTGCAAATCAGACAGTTTCCTGCGATGGAGAGAATTGTGAAAAGCATAAAATTTGCGAGTATATTGGCTCTGGAAACTATAACTGCACCTGCACCCCAGGTTATTACGGTGACGACTGTGAAGAGGAGTGTCCCTGTCAGAACGGAGGGGTTTGTGTTGATGTGAATGGCACCTGTGATTGTCCAACAGGCTTCACTGGACTATACTGTCAGTTTGAGGTAACACAAACACCCTGTAGTAACAACCGACCGTGTCCGGATGGAGGTCCATGTTTAGAGTATGGCGGCACATACCTCTGCACCTGCCAAACTGGTGTTGACTTTGATCACAAGGATTTCTATCCATATGtACAGCCCCGATCAGCCTGCGATTCCTCACCGTGTCAGAATGGAGGCTATTGCTATGAGAGGGATGGAGGCTATATTTGTGAGTGCAAGCACGGCTACAGAGGCAAGCATTGCGAAAGAGtcaGATTAAGTATCTGTGCCTCTAGTCCCTGTCGTAATGGAGGCTCTTGTAAAGAAGAAGCTGACAGCTACCGATGTGTCTGTCCCTACCGTTTCACAGGGAAGCACTGTGAAGTGGgAAAGCCAGATCCTTGTGCTTCCAGCCCCTGCCTGAACGGCGGAACATGTTTCCACTACATTGGTAAATACAAATGTGAGTGCTCCTCAACCTTCGTAGGAAGACACTGCGAGATCAACAGAGGATCCAATCCGACTTTGGAGGGTCTGGACTGTGGCCCCCCTGTGAAAGTCAAGCACGCAGAGGTGCAGTATTCCTCCACTTCCCCGGGCTCCATGGCTCTGTATGCATGCCACCCAGGCTACACTCCCCTTCCCAGGGCCACCCAGAGCATCTGCAGCAGCCAGGGGTCCTGGAGCCAGCCTCCAGTCTGTGAAGAGATAAACGAGTGTTTGTCTCTGCCATGCATGAATGGGGGAACTTGTCGCGATAGGGTAGCCTCCTACCTGTGTGAATGTGAAGATGGTTTTAGTGGCCAGCGCTGTCAAACAGATATTGATGAATGCCTTTCTGAGCCATGCAAGCACGGAGGTACATGTGAGGATCAGCCTGGTTCTTACTTCTGTCACTGCCAGCAGGGCTATGCCGGACAGGACTGTGAGATAGaacaGGATGGATGTGAGCCAAATCCTTGCTTGAATGGAGGTGTATGCCGAGGCTACAGGAGAAaccacctgtgtgtgtgtaaagagggTTACGTCGGAGACCGCTGCCAGACATTGGAGAACCCGTGTGTACTGCAGCCGTGCGGGAGCCGAGGCGTCTGTTGGAGCGACAGAAGAGGGAACTACAGCTGCGCCTGCAGGGTGGGCCACACAGGCAGAGACTGTGAGAGAGACCTGTTGCCTCCATCTGGCCTGCATGTGTTGCGGGTGGAGGAAAACGAAGTGGAGTTACGCTGGGATCAGTCAGATGCCACTCAGAATTTAATCAGCGGCTTTGCTGTTGCCTTCGCTCCTATTGGTCGTGGACCAAGGAAGACGGACTACCTGGAGAAGCAGCATTCTACTTATATACTACAGGGTCTGAACCCAGGACAGCTCTACAACATCTCCACGTTCTCCGTCAAACGCAACACCAACAGCAATGACATAAGCCAGCCAGCTTTCGCTCTCATCCGCACTAGGCCACGTAAGGTGGAACAGCTGGAGGTGGTGAATGTGTCCTCCTCTCAGGTATGGCTGCGCTGGCTGGTGCACGTTGGTCGCCATGTAGCGGTCAGTCAGGTTCGGGTGTCTCTGGTGCCCGCGGATGGGAGCGGACCTCGGACAGCCGTGCTCAATAGCAGCGTCACAGAGTACTCCTTCAGCACATTGCTCCCAGGTCAGATGTACACAGTAGATGTAGTCACACAGAGTGGTTTGCGCCCTGAAGACCTCCCATCAACTAGTAAATCTGCTGGGCCACTGCACTTCTGGACCCGACCTCTTCCACCTCAGAACCTTTCGCTCTCCCACATCAGCACCACTTCTGCACTAATCACATGGGACCATCATCCTCGGAATCTTCCAGATGGTTTTGTGGTGAATGTTACTCGCGGCCTGAGCACCCGTAGCCGGTACCTACCTGACGGAAGTTTAGGGACCTATACACTGAGAGACCTCACTCCAGGACAACATTATCGGCTTGCCCTCACTGCTCTGCGCAAAACAGGGCAGGACAACATTCAGAGTGTACCTCAACACCTGGCCTTCACCACACTACCGGTTTCAAAGAGCCAAAGCAGAGGTGACAGGCCTAAGGGAGGACAGGACTCCCAGACGGGACAGACCTTGACACAAGTTCAAGATGGAGGCACAGATGACCACACGGAGCTCTTTGAAGAGCCACAAAGATATACAGAGCTTATTGATGGAAGAGGGAGAATTACAGCTAAATTTACCAACCTTCCACAAAAAACCATCAGACACCGCACAAAGCCTGAACCTCCGATAAAGTTAGAAAAGATGGAAGAAACCACCAATAAGATAAGCCTAGCTCTGGAAATTCCTGAAGAAGCCACAAAGAGTAAATCTGAGTCATCCCAAGACTGCAGGACTCAGCTCTGCCAGAATGGAGGAACATGTGTGCGGATCAACGAGTCGTTCAGCTGCAACTGTCCTGCTGGCTTCAAGGGCAGACGCTGTGAGCTGTATTGTCAGCGAGTACCTCACCCATGTACTCGCCTTTACTCCGAAACAAAGACTGTGCCTGTGTGGGAGGATGGGGTCTGCCATTATTTGTACAAAAGGACGTATAAAGTTCAGCAGGATGTTTGTTTCAGAGAGATATGTGAGCCTTTGCTGCCTAAAAAAGTACTGCCTAAGACTCCAAaCAGAAgaactcaaaaacaacaacaatagtggagGCTGAACCAACGACAACTTTGGGGAGTAACTGCTTCTCTTCGTCTTAGTTTAAATGAGGATGCATTACCGGCATTGTTCACTCTTTTTTGCATCACTGGTCACCTTTCATTGGCTACTTTGCCCTATGGAtgtatatttgttcatttacacCTCCAGGGCCGCATTCATGAACAATTGTTAGTACAAAGAGTAGCTCAGAGTAGCTCAAAAgttattgaaattttttttacttttccctTAAAATTACAGAGAAAGTCACAGTAAAGATTACAGTTATTCgcaaagcattttaaaagagcTCTGAAGGTCAAAAAGTGTTAGGAGTGGGGAGGAAGACTTTTAATGAACTTAAGAGTTTCTTTAGCATTGGAGAAAATGGTCGAAAGACGAAGAGGGAGAAGAAATGTGTTGGGAGACAATATGATAGTGACTTAAAAGGATGCTAGATTCGATCGTGCAGGGGTCGTGTTTGTGACCCAACAACTATATAAGCAGTGCTTAACAAATTCATTAGACCATCAAAAGCAAATCTTTGGGAACAACTAGAAACTATTTGGAAGTTGGTAACAGCAGAGACTGTGgaaaagtacataaaaacaatGGCAGCAAGAACGCAAGCTGTAAGATGAAAaagatacaaaataataataaagaaaataataaaaattatacacacataataatatGTTGTTATTATGCGTGAATACTAGAACAATAGAAGACTATTTTGTCTTCTATTG

Function

symbol description
sned1 Predicted to enable Notch binding activity. Predicted to act upstream of or within cell-matrix adhesion. Orthologous to human SNED1 (sushi, nidogen and EGF like domains 1).

NR:

description
PREDICTED: sushi, nidogen and EGF-like domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K24470 SNED1, IRE-BP1; insulin-responsive sequence DNA-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241060.1 True 5210 mRNA 0.49 33 12806500 12835911

Neighbor

gene id symbol gene type direction distance location
LOC122346411 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding upstream 40801 12760860 ~ 12765699 (+)
LOC122346842 LOC107752644,LOC107696763,LOC107593183,LOC107552264,LOC107753650,LOC107694115 coding upstream 46092 12740819 ~ 12760408 (+)
LOC122347050 tmem131,LOC107659030,LOC107692350 coding upstream 75417 12704645 ~ 12731083 (+)
LOC122346426 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding upstream 337083 12464542 ~ 12469417 (+)
LOC122346457 scly,LOC107552249,LOC107552250,LOC107752645 coding upstream 362259 12439100 ~ 12444241 (+)
ryk ryk,LOC107752642,LOC107696766,LOC107694116,LOC107753628 coding downstream 2318 12838229 ~ 12877785 (+)
slco2a1 LOC107753639,LOC107694117,LOC107552274,LOC107593170,LOC107696767,LOC107752643 coding downstream 45423 12881334 ~ 12897897 (+)
rab6ba rab6ba,rab6b,LOC102207753,LOC100696791,LOC103151367 coding downstream 108384 12944295 ~ 12965465 (+)
cep63 cep63,LOC107590660,LOC107694114,LOC107552272 coding downstream 136180 12972091 ~ 12981529 (+)
amotl2a amotl2a,LOC107717938,LOC107694113,LOC107752638,LOC107590659,LOC107696770,LOC107552270 coding downstream 169080 13004991 ~ 13014401 (+)
G44622 NA non-coding upstream 106923 12664820 ~ 12699577 (+)
G44611 NA non-coding upstream 134835 12564092 ~ 12671665 (+)
G44606 LOC107593190,LOC107696746,LOC107552261,LOC107753661,LOC107694109,LOC107752664 non-coding upstream 312858 12492953 ~ 12493642 (+)
G44604 NA non-coding upstream 324318 12477124 ~ 12482182 (+)
G44575 hdlbp,LOC107733253,LOC107694132,LOC107552253,LOC107696756,LOC107752661 non-coding upstream 812363 11993558 ~ 11994137 (+)
G44615 NA non-coding downstream 247469 13083380 ~ 13084230 (+)
G44640 NA non-coding downstream 257945 13093856 ~ 13095910 (+)
LOC122346816 NA non-coding downstream 265368 13101279 ~ 13103566 (+)
G44872 NA non-coding downstream 477642 13313553 ~ 13313854 (+)
G44873 NA non-coding downstream 499278 13335189 ~ 13335542 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 800 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 279543 12521773 ~ 12526957 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other upstream 646601 12154268 ~ 12159899 (+)
G44588 NA other upstream 714045 12087399 ~ 12092455 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other upstream 795961 12002147 ~ 12010539 (+)
smx5 lsm2,LSM2,smx5 other downstream 244654 13080565 ~ 13082119 (+)
G44645 NA other downstream 272824 13108735 ~ 13109366 (+)
G44887 NA other downstream 558318 13394229 ~ 13409912 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 1136262 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 2400254 15236165 ~ 15244280 (+)

Expression


Co-expression Network