LOC122346455 (tns1a,LOC107688818,LOC107709585,LOC107562221,LOC107663075,LOC107586330,LOC107719294)


Basic Information

Item Value
gene id LOC122346455
gene name tns1a,LOC107688818,LOC107709585,LOC107562221,LOC107663075,LOC107586330,LOC107719294
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7385719 ~ 7388299 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241072.1
ttttatctttttctcaCAGCATGTAATGTTTTGTACATAAACTCCGTGGATATGGAATCGCTGACTGGTCCTCAGGCTGTGGCCAAAGCCATCACTGAAACTCTTGCTGCCAGATCCTCTCCCACAGCAACCATTGTCCACTTCAAAGTGTCCACACAGGGCATCACACTCACTGACAATCAGAGGAAGATTTTTTTTCGTCGTCATTACCCAATCAACATGATCACTTACTGCAATTTGGACCCACAAGACAGAAAGTGGAATAAAGCAGAGGGTGGTGTAGCAAAAATTTTTGGGTTTGTGGCTCGAAAACAAGGAAGCACGACTGACAATGTGACTCATCTGTTTGCTGAGCTGGAACCAGACCAGCCTGCTTCAACCATTGTCCATTTTGTCTCCAAAGTCATGCTGAACACCCAGAAACCTTGAGCGATCTTCTAGCAACCATCTTGGTTTCTCCATGAATCTGAATTTTCTCACCAAAGAGGATTTGGTTATACTTATCTTATTTTTCCAGAGTGGATTATTCTTTCTACATAcattattactttctttttgttGAGTAACTCTGGTGGTTGGGCTCTTACTCTTTCTTCTTTGTGAAGATTTGAAAACgatgctgttttttttgagtgaaaatcGTGCTGAAAAAAAGCAGATTAAGACTACGTCAGGGTTAAAGTACTGTAGTAAGTGTAAATGAAAGGGATAAAGATTGTCCCTCTGGCCTTCTTTATCGGGAGGCAGgactttacaataaaaaaatacaaatataaaatattatttagagaAAATGCCAATTTTGTGATTGAACAACCAAAGGTAGAGTTCAGGAAAAAAATTGTGTCTGAcgaatattttctttttattttgtaaaaaaaaaaaaaaagttaagatcAGACAAGTCTAAAACTCCAAATTCTTCTTTCTGTGTCCTCCTGTGAAAAGTATGAAGAAGCCATTTTGCATGTTTGCTTGCAAGAATCACAAGAGTAAGTCATTTTCTCTGAATTCAGAGGACATTAGTTTGCTCTGCTGTTACTCAGAAAAGCGTTTTGCAGAACTTagcttttcactttaaataaCAGACCAAATCTGTtgaaacaaatggaaaaaaaaaatgtggtccaaaaaatggcagaaaatcACCTTGCCAAATTGTTCACCACATAAAGACTTGCTACACTTGCCTGTGGACATGGAAATAGCAACTACACTGCAGTCACTGGAAACTTTATGCTGAGATTCTATTCATACGGATAGTAAAGAACACTGGCTCTACCCACAAATGTCCTGGCTGTGGTAGTAGATGTTTAGCTTTTTCTGAACTGTGCTCAACATCCCATTCACAGCTTTGCCCCAGTCAGTGACGATAATAAGACAACATTTTGTTGCATACTGTTTGAGTGCATGGGTAGATCCATTTTGTActtgtctttaaaatgtattacgaCAAACCATgacatttaatgaatatttatttttgttgcagtattactcatgggtaactaatattaaaatatagtgtatagtctacagaaaaaaaaaaaaaacttgacttaaaagttaaaaagaaattattttagctaaaatatcaaaatcaggTTTTGAGAAGCTCttgatgtaaaatgtatgttacggtttttgtctttatttgaatgtgtgtTCACTGTGTCACTGTGTTAGGTGATTTAGAATGAAAAGGCATGAATGTGGAAGAAAccgaaaaaaaatattttagattataaaaaaaaaaacaccaattaatatatgtatagaaATTTGCCATGAGTGCTGCCATTATGTGTGTGATTAAAATAGCTCCTGGATTGA

Function

symbol description
tns1a Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cell junction. Orthologous to human TNS1 (tensin 1).

NR:

description
PREDICTED: tensin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241072.1 True 1833 mRNA 0.36 4 7385719 7388299

Neighbor

gene id symbol gene type direction distance location
col18a1b LOC107709584,LOC107586328,LOC107688819 coding downstream 2914 7356348 ~ 7382805 (-)
LOC122347322 zgc:162999,LOC107586326,LOC107562228,LOC107688822,LOC108438154,LOC107709582,LOC107677632,LOC107719292 coding downstream 47831 7333023 ~ 7337888 (-)
psmb3 psmb3,LOC107688824,LOC102792592 coding downstream 113242 7269271 ~ 7272477 (-)
slc19a2 slc19a2,LOC107586324 coding downstream 124948 7254864 ~ 7260771 (-)
faimb faimb,LOC107709569,LOC107586372,LOC107688905,LOC107677619,LOC107562225 coding downstream 137603 7246256 ~ 7248116 (-)
tns1a tns1a,LOC107688818,LOC107709585,LOC107663075,LOC107719294,LOC107586330 coding upstream 220174 7608473 ~ 7659200 (-)
LOC122347094 tns1a,LOC107688818,LOC107709585,LOC107719294,LOC107562221,LOC107663075 coding upstream 273165 7661464 ~ 7695119 (-)
LOC122346795 igfbp2,igfbp2a,LOC107688817,LOC107731775,LOC107719297,LOC107663074,LOC108438161 coding upstream 337104 7725403 ~ 7732324 (-)
LOC122347101 igfbp2,igfbp2a,LOC107731775,LOC107688817,LOC107719297,LOC107663074,LOC108438161 coding upstream 577449 7965748 ~ 7980089 (-)
inha inha,LOC107731770,LOC107688903,LOC107719299,LOC107694906,LOC107569459,LOC107586362 coding upstream 624826 8013125 ~ 8015759 (-)
G43251 NA non-coding downstream 562698 6815260 ~ 6823021 (-)
G43161 NA non-coding downstream 902326 5995956 ~ 6483393 (-)
G43173 NA non-coding downstream 1362209 6018440 ~ 6023510 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding downstream 1630255 5747766 ~ 5755464 (-)
LOC122346635 NA non-coding downstream 1638325 5745439 ~ 5747394 (-)
G43472 NA non-coding upstream 41479 7429778 ~ 7430446 (-)
G43478 NA non-coding upstream 72892 7461191 ~ 7498435 (-)
G43516 NA non-coding upstream 409825 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 468166 7856465 ~ 7857596 (-)
G43513 LOC107688815 non-coding upstream 661098 8049397 ~ 8050678 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 56154 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 70945 7274840 ~ 7314774 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other downstream 140540 7108162 ~ 7245179 (-)
trim63a trim63a,murf1,LOC107586317,LOC105896535 other downstream 358292 7001115 ~ 7027427 (-)
G43248 pou3f3b,LOC107688836,LOC107559920,LOC107660107,LOC106574614 other downstream 557991 6804058 ~ 6827728 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other upstream 191596 7579895 ~ 7586367 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other upstream 348791 7737090 ~ 7770451 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other upstream 658803 8047102 ~ 8048008 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 1320407 8708706 ~ 8713858 (-)
G43890 NA other upstream 1872317 9260616 ~ 9261245 (-)

Expression


Co-expression Network