LOC122346457 (scly,LOC107552249,LOC107552250,LOC107752645)


Basic Information

Item Value
gene id LOC122346457
gene name scly,LOC107552249,LOC107552250,LOC107752645
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12439100 ~ 12444241 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241073.1
TCAGGTTCATCAGTGTTATCTCAGCGATGGTTCTTGCAGAATGACTATAAAgacagttttagtgttttagttgttttggtCGTAGAAGCAGTCAGCAGACTCTACCAGCAGTATGAATCAGAGGGAAAGTGTGATCTAGATAATGGCTGAAAAGACCCCTGTCATCCTGGGTCATAATCTATGGGGAACCGAAACACATCATTGTGGGTCTGAcctgcatcatcatcatcatcatcatcatcatcatcatgtgtCTGATGGGCCAGAGAGAATATATATGGATTACAACGCCACCACGCCAGTGGATCCAGAGGTGGTCAGCGTTATTACTGATGCTTTAACTGACGCGTGGGGAAATCCCAGCAGTAATTACCTACCAGGTCTAAAAGCTAGAGACATTATTTACCATTCCAGAGACACTATTGCCAGGATGGTTGGTGGAAAAGCAGCAgacattatttttacttcagGAGGAACTGAGGCCAATAATCTGGTGTTTCACACAGCTGTGGAGCACTTCAGGCTGAGCAAGGCTTCTGCAGAGGGAGACGTGAACAGTGAGCAGCTAAATGGAAGAGGCTCCCCGCCTCATATTATCATCTCCAATGTCGAGCATGACTCCATCCAACTCGCAgctaaacatttgttaaaagaGGGTAAAGCAGATGTCACATTTGTGCCAGTGTCCAAGGTGACGGCACGGGTGGAGGTCGAGGATGTCATTGCAGCGATTCGTCCCACCACCTGCCTGGTGTCGGTCATGCTGGCCAATAATGAAACAGGCATTATTATGCCAATTAAAGATATTTGTCAGAGGGTGAGGGAAGTGAACAAACAGAGGGCAGCATCAGCTCCCAGAATCCTCCTTCACACGGATGCTGCACAGGCCATCGGAAAGATAAGAGTGGATGCACATGAGCTGGGAGTAGACTATATTACCATTGTAGGGCACAAGTTTTATGGCCCTCGAATTGGCGCTTTGTTTGTGAATGATCCTGGACCCACGACTCGTTTACCCTCTGTTTTTGGAGGAGGACAAGAGCGCAACTTCAGGCCAGGAACTGAGAACACAGCAATGATAGCCGGTCTGGGAAAGgCTGCAGAATTGGTCAACTTAAATCTAGTGGAGTATGAAGCCCATTTCCTGGACATACGATTCTATCTAGAGCAGAAGCTGCTTgctGTCTTCGGAGGAGATAAGATTCATTTTAACAGCCATTTTCCTGGTTCAGACATTTTGCCCAACACGTGTAACATATCCATTTTGGGAAGGGGACTTCAGGGTGAGGAAGGAGTGCTGTCCACCTGTAGGAGGTTGTTGGCCAGTGTGGGTGCTGCCTGCCACTCAGACAGAGAAGATCAACCTTCCCATATTCTTCTGAGCTGTGGGATTCCATATCATGTGGCTACCAACGCTTTGAGGATCAGTGTGGGTAGAAGTACCTCCCATGAAGATGTGGACATTGTCGTGGAGGATCTGAGAGACACTGTAGAGCAACTGGAGCGAATGAACTAGCACCAGGGATATTTTACctgcctctgtgtgtgtatatgtatataaccaaaaaagttttagttttgcaCATAAATTCTGAAATAAGTGTGGAGTTCAGATTTCAGGGTCATCGTCAGGTTGCACTATATCGATCTAAGAGCTCTTTATTTAgcagaatataatatttaatgtgactCTTATCAGGTGGTGTGTCATGAGACTAGAGTTCAGGATTCAGACATTGTCAGGttgctctatatatatatatttaatcagaaTATAATGTTCAACGTGCATATTACTTGGtaaaacataatatatggaACTTCAGGGAATTTAGCTCATAAatagtaaaagaaaatacataaagCAGCTTGCAAACGGAGGTGTGCAATGTGTAAAGTCCACAAAGTCCAATTACAGACTGACTTATAGAGTGTGTCACTTTGCAAAAAGTGATCGAattgtttatttctgtcattgGGAAACTAACCAACCACtgcacaaaatatgaaaatcagcTCCCCATAACAGAACAAATTAcactgcaaaatataatttttggtaTGTATTGCACACTCGTATTTGCATATGAGTGTTGGCTTTGGTCATTTCaggtcagtttttatttttaacatagttAAAATTGCCTCAGTTATTTGGTTTTGATACTCATTAAT

Function

symbol description
scly Predicted to enable catalytic activity. Orthologous to human SCLY (selenocysteine lyase).

NR:

description
PREDICTED: selenocysteine lyase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01763 SCLY; selenocysteine lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241073.1 True 2175 mRNA 0.43 14 12439100 12444241

Neighbor

gene id symbol gene type direction distance location
kif1aa kif1aa,kif1a,LOC107696745,LOC107694128,LOC107552277,LOC108427666,LOC107593169 coding upstream 286136 12097680 ~ 12152964 (+)
atg4b atg4b,LOC107696761,LOC107552278,LOC107593167,LOC107694120 coding upstream 357072 12075450 ~ 12082028 (+)
boka boka,bok,LOC107733256,LOC107752647,LOC107696759,LOC107694130 coding upstream 364536 12065298 ~ 12074564 (+)
farp2 farp2,LOC107694112,LOC107696757 coding upstream 384090 12011095 ~ 12055010 (+)
trnai-aau_2 NA coding upstream 466056 11972971 ~ 11973044 (+)
LOC122346426 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding downstream 20301 12464542 ~ 12469417 (+)
LOC122347050 tmem131,LOC107659030,LOC107692350 coding downstream 260404 12704645 ~ 12731083 (+)
LOC122346842 LOC107752644,LOC107696763,LOC107593183,LOC107552264,LOC107753650,LOC107694115 coding downstream 296578 12740819 ~ 12760408 (+)
LOC122346411 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding downstream 316619 12760860 ~ 12765699 (+)
sned1 sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186 coding downstream 362259 12806500 ~ 12835911 (+)
G44568 sox14,LOC107679857,LOC107756185,LOC107713406,LOC107713405,LOC107694108,LOC103365676 non-coding upstream 174313 11779030 ~ 12264787 (+)
G44575 hdlbp,LOC107733253,LOC107694132,LOC107552253,LOC107696756,LOC107752661 non-coding upstream 444963 11993558 ~ 11994137 (+)
G44574 hdlbpa,hdlbp,LOC107752661,LOC107694132,LOC107733253,LOC107696756 non-coding upstream 461689 11937101 ~ 11977411 (+)
LOC122347449 NA non-coding upstream 733174 11689692 ~ 11705926 (+)
G44521 NA non-coding upstream 795402 11641081 ~ 11643698 (+)
G44604 NA non-coding downstream 32883 12477124 ~ 12482182 (+)
G44606 LOC107593190,LOC107696746,LOC107552261,LOC107753661,LOC107694109,LOC107752664 non-coding downstream 48712 12492953 ~ 12493642 (+)
G44611 NA non-coding downstream 119851 12564092 ~ 12671665 (+)
G44622 NA non-coding downstream 220579 12664820 ~ 12699577 (+)
G44615 NA non-coding downstream 639139 13083380 ~ 13084230 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other upstream 279201 12154268 ~ 12159899 (+)
G44588 NA other upstream 346645 12087399 ~ 12092455 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other upstream 428561 12002147 ~ 12010539 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other upstream 1018770 11415273 ~ 11420330 (+)
pik3r6a zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC105903457 other upstream 1546640 10882960 ~ 10892460 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other downstream 77532 12521773 ~ 12526957 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other downstream 321580 12765821 ~ 12805700 (+)
smx5 lsm2,LSM2,smx5 other downstream 636324 13080565 ~ 13082119 (+)
G44645 NA other downstream 664494 13108735 ~ 13109366 (+)
G44887 NA other downstream 949988 13394229 ~ 13409912 (+)

Expression


Co-expression Network