G25661


Basic Information

Item Value
gene id G25661
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1755538 ~ 1757321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU28961
ACTCCTGAAACTTTACAGTGTGTACATGGCCCATTAGTCTTCTGATGCCTTCAGGAACATGGTGCCTCTGCAAAGTCTCAATGACTTTGTGGGGAATTGAGCTATAGGCATTTGCCAAGTCTAACACAGCACCACTAGGTTGCCCTCAGTTTCTCTGGCCTCCCTCAGAAGCTGTGTGATGACTCCTGTATGCTCCAAGCAGCCTGGTACCTTTGGGATGCCTCCCTTCTGGACAGAGGTGTCGATGTAATTGTTCCTCAGGAAGTACTCAGTTAGGCACTCTGCCAACATGCTGAAGGTTTTTCCTTCAACACCAAGCAAAGATATTATCCTAAACGAGTTGATAATAAAATAATAATAAAAATATTAATTCTGGTTGATAATTAAAAATAATTATAATAATTAAATTAAATTTATTTTATTTTAACTGAGTTTAATTTAGTTTAAATTTAAATTGTTTATCTTTATAGTTTGGAACATGGAGAACAGAAGAGAATCACACAAGGGCTACGGAAATATACATGTGATCTTACACTGGATCCAAACACAGCACACACTCATCTCATTCTGTCTGAGGGCAACACAAAGGTGACATATGTGAAAGAGAAGCAATTGTATCCTGATCATCCAGAGAGATTTGAGAACTTTGAGCAGGTTCTGAGTAGAGAGAGTCTGTCTGGACGCTGTTACTGGGAGGCTGAATGGAGTGGACAGGCTGTTATATCAGTGTCATATAAAGGAATCAGCAGGAAAGGAGGAAGAGAATGTCGGTTTGGACTCAATGAAAAGTCATGGATTCTGTTCAGCGCGGATAACAGATTCACTGCCTGTCATAATAATAAGAGAACAGATGTACCTGCCCCTTCACCTCCTTCTACTAGAATCGGCATGTTTGTGGACTGGCTGGGCGGCAGTCTGTCCTTCTACAGCGTCTCCGGCACCCTCACACACTTGCACACATTTCACTGCACGTTCAAAGAGCACCTCCATGCAGGATTTTTGCTTGACTTGGGTTCATCAGCATCTTTGTCCTCTTTTAGGACATTATACACCCAACTGGGTAAAAAAGAAAATTAAAAATATTTTGTTTCATATAAATTCAACTTAAACTACCTCAGAAACTTGAAAATGCAAATGCTGTCTTTATTTATGCACACTCATGTTATTCCAAACCTCTATGATTTTATTAAGATTAATGTTATGTTAATTCAAAGTTAAATAGCATACAGTTGAGGCTATAGCTAGAAGATGTAGCTAATGTTATTCTGTTGTATAGCAATGTTTTTCTATTTATAACTGTTGTAATTTATAATAAAGTTTTTTTTAACATCGTAAATAACGTATACATTGTTTTAATTGTTGTTTAAATTAATTCTGATATTTGCATACCTGTAAAACTTATTAATAACTGCCTGCGTTGTTTCTCATCTCAACAACCTGATGACTGTGTGCAAATGTAGTGTAAAAATGTTTTTTGTTTGTTTGTTGTTGTTTTTTTCCAGCAAAATATTTTTTAAATTTTTTTTTATGTTTTTTTTTTTTAGCAATATTATGATTTTGCTGAAATGTTCAGTTTATCTTCATTTCAAATATTTAAAACCATATTTTCAAATGCTTCTTTTTCTGTAAAGGAAACCTACAGCATAGTTGTAGTAGTTCTGTGTTACACAATATTATATTCAGTCCTAATAAGTGTTAAATTACGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU28961 True 1706 lncRNA 0.35 2 1755538 1757321

Neighbor

gene id symbol gene type direction distance location
CI01000004_01626984_01627238 NA coding downstream 128300 1626216 ~ 1627238 (-)
CI01000004_01605140_01622364 NA coding downstream 133174 1604552 ~ 1622364 (-)
CI01000004_01554696_01564701 NA coding downstream 190837 1554656 ~ 1564701 (-)
CI01000004_01440447_01443088 NA coding downstream 312246 1439771 ~ 1443292 (-)
CI01000004_01404265_01425424 NA coding downstream 330114 1404265 ~ 1425424 (-)
CI01000004_01758554_01762415 NA coding upstream 1101 1758422 ~ 1762415 (-)
CI01000004_01773383_01774888 INSL5B coding upstream 15607 1772928 ~ 1774942 (-)
CI01000004_01814534_01821755 CMPK1, CMPK coding upstream 56461 1813782 ~ 1821755 (-)
CI01000004_01833090_01839923 SLC35A3B, SLC35A3 coding upstream 75693 1833014 ~ 1839923 (-)
CI01000004_01853673_01854481 NA coding upstream 95867 1853188 ~ 1855232 (-)
G25712 NA non-coding downstream 2078 1753239 ~ 1753460 (-)
G25700 NA non-coding downstream 24915 1728532 ~ 1730623 (-)
G25690 NA non-coding downstream 63477 1691294 ~ 1692061 (-)
G25672 NA non-coding downstream 64701 1689359 ~ 1690837 (-)
G25687 NA non-coding downstream 69330 1685172 ~ 1686208 (-)
G25666 NA non-coding upstream 147992 1905313 ~ 1907541 (-)
G25744 NA non-coding upstream 152969 1910290 ~ 1910523 (-)
G25642 NA non-coding upstream 179878 1937199 ~ 1944111 (-)
G25640 NA non-coding upstream 258936 2016257 ~ 2018609 (-)
G25676 NA non-coding upstream 316412 2073733 ~ 2074026 (-)
G26788 NA other upstream 1517112 3267683 ~ 3275721 (-)
G27746 NA other upstream 3420906 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 3863062 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 4777506 6538904 ~ 6541252 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G137305 NA non-coding CI01000026 null 16176144 ~ 16176463 (+)
bowfin (Amia calva) G124434 NA non-coding CM030136.1 CM030136.1 21941177 ~ 21953671 (-)