sox14 (sox14,LOC107679857,LOC107756185,LOC107713406,LOC107694108,LOC103365676)


Basic Information

Item Value
gene id sox14
gene name sox14,LOC107679857,LOC107756185,LOC107713406,LOC107694108,LOC103365676
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11850258 ~ 11851231 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241126.1
TGATGCCGTTTTCCTACTCCTCCGGCTTTCCAGAAGTGGCATGATCCGTGTCTGTCGGCAGGACAGGTGAATACTATTTTCTCTTGGTTGGTcgaagaacttttttttttgttgttattttaacagGGAACCGTAAAAAATGTCAAAGCCGGTAGATCACATCAAGAGACCCATGAACGCCTTCATGGTCTGGTCAAGAGGCCAGAGGAGGAAAATGGCTCAAGAGAATCCCAAAATGCACAATTCAGAAATAAGCAAAAGACTCGGCGCCGAGtggaagctgctctctgaatcCGAGAAGCGACCGTACATCGACGAGGCCAAAAGGCTGAGGGCTCAACACATGAAAGAACACCCAGACTACAAATACAGACCCAGGCGCAAGCCCAAGAACCTCCTCAAGAAGGACAGGTATGTGTTTCCTCTGCCCTACCTGGGCGACACGGATCACCTGAAAGGACTTCCGGTCTCCGCCACGGACTCGCTCTTAGGTTCCTCGGAAAAAGCCCGCGCGTTCCTGCCTCCCACATCAGCCCCTTACTCCTTCCTCGACCCGAGCCAGTTCAGCTCCAGCGCTATCCAGAAGATGACAGAGATGCCCCACACGTTGGCCACCAGCACTTTACCTTACGCATCATCTCTGGGATACCAGAACGGCGCATTCGGGAGCCTGGGCTGCCCCAGCCAGCACACCCACACCCACCCGTCGCCCACAAACCCCGGGTACGTGGTGCCGTGTAACTGCACCGCATGGTCGGCGTCGAGTTTACAGCCGCCTGTTGCCTACATACTGTTCCCGGGTATGACCAAGAGTGGGATTGACCCGTACTCATCAGCACACGCCGCTGCTATGTGACTCCACcgctaaaaaacaaacaaacggtCTCCTCTTTTGAAAACTTGAATACAGCAATGCATGTACATAAGAAGAGAGGAATGAGCAAGACATTTATACTGAGGCCGCGTGGACATGA

Function

symbol description
sox14 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hypothalamus development. Predicted to be located in nucleus. Orthologous to human SOX14 (SRY-box transcription factor 14).

NR:

description
PREDICTED: transcription factor SOX-14

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241126.1 True 974 mRNA 0.53 1 11850258 11851231

Neighbor

gene id symbol gene type direction distance location
hs2st1b hs2st1b,LOC107694133,LOC107679861,LOC107557741,LOC106560611,LOC108427652 coding downstream 64096 11734816 ~ 11786162 (-)
lmo4b lmo4,lmo4b,LOC107593176 coding downstream 141778 11695648 ~ 11708480 (-)
pkn2b zgc:153916,LOC107749976,LOC107662805,LOC107564625,LOC107698884,LOC108413223 coding downstream 369065 11449837 ~ 11481193 (-)
lrrc8c LOC107749978,LOC107593158,LOC107698887,LOC107564627,LOC107675427,LOC107730691 coding downstream 413155 11428874 ~ 11437103 (-)
lrrc8db LOC107749977,LOC107730703,LOC107698886,LOC107564626,LOC107675437,LOC107555394 coding downstream 425465 11415268 ~ 11424793 (-)
trnag-ucc_1 NA coding upstream 121249 11972480 ~ 11972551 (-)
trnap-ugg_4 NA coding upstream 121478 11972709 ~ 11972780 (-)
hdlbpa hdlbp,hdlbpa,LOC107694132,LOC107696756 coding upstream 122234 11973465 ~ 11998495 (-)
stk25a LOC107733254,LOC107593165,LOC107694119,LOC107696758 coding upstream 204661 12055892 ~ 12062418 (-)
dtymk dtymk,LOC107593168,LOC107694123,LOC107696762,LOC107552279 coding upstream 230746 12081977 ~ 12083540 (-)
G44501 NA non-coding downstream 421495 11428125 ~ 11428763 (-)
G44460 NA non-coding downstream 607752 11242277 ~ 11242506 (-)
G44459 NA non-coding downstream 608226 11241637 ~ 11242032 (-)
G44457 NA non-coding downstream 610794 11239119 ~ 11239464 (-)
G44452 NA non-coding downstream 612060 11237962 ~ 11238198 (-)
G44705 NA non-coding upstream 298603 12149834 ~ 12437749 (-)
G44730 LOC107552274,LOC107593170,LOC107694117,LOC107696767,LOC107753639 non-coding upstream 672725 12523956 ~ 12525300 (-)
G44737 NA non-coding upstream 744615 12595846 ~ 12965513 (-)
LOC122347051 tmem131,LOC107659030,LOC107692350,LOC107732007,LOC107548642 non-coding upstream 876900 12728131 ~ 12730973 (-)
G44773 NA non-coding upstream 1039485 12890716 ~ 12891336 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 780792 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 865126 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 1014733 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other downstream 1133517 10710045 ~ 10716741 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 1341255 10434204 ~ 10509003 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 674525 12525756 ~ 12897718 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 1804029 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 1866971 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 2309244 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 3476352 15327583 ~ 15330851 (-)

Expression


Co-expression Network