Gene
RNA
| Item | Value |
|---|---|
| gene id | tp63 |
| gene name | tp63,LOC107574491,LOC107590651,LOC107659018,LOC107752631,LOC107696778 |
| gene type | coding |
| species | tiger barb (Puntius tetrazona) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_056704.1 |
| NCBI id | CM032073.1 |
| chromosome length | 27473687 |
| location | 13350521 ~ 13390651 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| symbol | description |
|---|---|
| tp63 | Enables DNA binding activity. Acts upstream of or within several processes, including epidermis morphogenesis; intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress; and negative regulation of transcription, DNA-templated. Located in nucleus. Is expressed in several structures, including ectoderm; epiblast; integument; pharynx; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including ADULT syndrome; EEC syndrome (multiple); ectodermal dysplasia (multiple); orofacial cleft 8; and split hand-foot malformation 4. Orthologous to human TP63 (tumor protein p63). |
| description |
|---|
| tumor protein 63 |
| id | name | namespace |
|---|---|---|
| GO:0010332 | response to gamma radiation | biological_process |
| GO:0006915 | apoptotic process | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0042771 | intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator | biological_process |
| GO:0006978 | DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator | biological_process |
| GO:0031571 | mitotic G1 DNA damage checkpoint | biological_process |
| GO:0070059 | intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0010165 | response to X-ray | biological_process |
| GO:0051262 | protein tetramerization | biological_process |
| GO:0007417 | central nervous system development | biological_process |
| GO:0034644 | cellular response to UV | biological_process |
| GO:0043523 | regulation of neuron apoptotic process | biological_process |
| GO:0000785 | chromatin | cellular_component |
| GO:0030425 | dendrite | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0002039 | p53 binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003684 | damaged DNA binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K10149 | TP63; tumor protein p63 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_043241145.1 | False | 3453 | mRNA | 0.47 | 14 | 13352505 | 13390651 |
| XM_043241146.1 | False | 3433 | mRNA | 0.47 | 14 | 13352513 | 13390651 |
| XM_043241147.1 | False | 3417 | mRNA | 0.47 | 14 | 13352505 | 13390651 |
| XM_043241149.1 | False | 3397 | mRNA | 0.47 | 14 | 13352513 | 13390651 |
| XM_043241150.1 | False | 2389 | mRNA | 0.52 | 14 | 13352477 | 13389570 |
| XM_043241151.1 | False | 2960 | mRNA | 0.46 | 12 | 13367496 | 13390651 |
| XM_043241152.1 | False | 2948 | mRNA | 0.46 | 12 | 13367496 | 13390651 |
| XM_043241153.1 | False | 4232 | mRNA | 0.46 | 14 | 13350533 | 13389439 |
| XM_043241155.1 | False | 4231 | mRNA | 0.46 | 14 | 13350530 | 13389446 |
| XM_043241156.1 | False | 2924 | mRNA | 0.46 | 12 | 13367496 | 13390651 |
| XM_043241157.1 | False | 2912 | mRNA | 0.46 | 12 | 13367496 | 13390651 |
| XM_043241158.1 | True | 4968 | mRNA | 0.43 | 11 | 13350521 | 13385990 |
| XM_043241159.1 | False | 2486 | mRNA | 0.45 | 9 | 13367495 | 13385984 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tprg1 | tprg1,LOC107590652,LOC107751286,LOC107684336,LOC107552257,LOC107696755,LOC107752662 | coding | upstream | 16947 | 13314057 ~ 13333574 (+) |
| LOC122346939 | lpp,LOC107684332,LOC107590653,LOC107717931,LOC107696776,LOC107752632,LOC107552245,LOC108427685 | coding | upstream | 71341 | 13119195 ~ 13279180 (+) |
| inpp5d | LOC107694111,LOC107590654,LOC107717933,LOC107696774,LOC107552268,LOC107752650 | coding | upstream | 270475 | 13065838 ~ 13080046 (+) |
| gpr17 | gpr17,LOC107752663,LOC107717943,LOC107694121,LOC107590682,LOC107552259,LOC107696754 | coding | upstream | 286092 | 13058859 ~ 13064429 (+) |
| LOC122346752 | LOC107590657,LOC107694127,LOC107717944,LOC107696773,LOC107752637,LOC107552269 | coding | upstream | 292400 | 13039523 ~ 13058121 (+) |
| LOC122347353 | LOC107731845,LOC107659022,LOC107692422 | coding | downstream | 78753 | 13469404 ~ 13471933 (+) |
| rpl5b | rpl5b,rpl5,LOC107659024,LOC107590646,LOC107732018,LOC107566486,LOC107692344,LOC103368809 | coding | downstream | 145860 | 13536511 ~ 13542567 (+) |
| atp1b1a | NA | coding | downstream | 207888 | 13598539 ~ 13607514 (+) |
| zgc:172121 | zgc:172121,LOC107659029,LOC107692348,LOC107732016,LOC107590642,LOC107731828 | coding | downstream | 248343 | 13638994 ~ 13644273 (+) |
| si:ch211-201h21.5 | si:ch211-201h21.5,LOC107659008,LOC107731846,LOC107590672 | coding | downstream | 261745 | 13652396 ~ 13655156 (+) |
| G44884 | NA | non-coding | upstream | 88 | 13350198 ~ 13350433 (+) |
| G44881 | NA | non-coding | upstream | 3374 | 13346880 ~ 13347147 (+) |
| G44879 | NA | non-coding | upstream | 4577 | 13345264 ~ 13345944 (+) |
| G44876 | NA | non-coding | upstream | 7681 | 13342476 ~ 13342840 (+) |
| G44874 | NA | non-coding | upstream | 11216 | 13339034 ~ 13339305 (+) |
| G44890 | NA | non-coding | downstream | 8371 | 13399022 ~ 13399548 (+) |
| G44898 | NA | non-coding | downstream | 26108 | 13416759 ~ 13416972 (+) |
| G44899 | NA | non-coding | downstream | 26907 | 13417558 ~ 13417840 (+) |
| LOC122346508 | NA | non-coding | downstream | 199234 | 13589885 ~ 13594601 (+) |
| G44997 | bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 | non-coding | downstream | 259464 | 13650115 ~ 13650883 (+) |
| G44645 | NA | other | upstream | 241155 | 13108735 ~ 13109366 (+) |
| smx5 | lsm2,LSM2,smx5 | other | upstream | 268402 | 13080565 ~ 13082119 (+) |
| crocc2 | crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 | other | upstream | 544821 | 12765821 ~ 12805700 (+) |
| LOC122347491 | LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 | other | upstream | 823564 | 12521773 ~ 12526957 (+) |
| scly | scly,LOC107552249,LOC107552250,LOC107752645 | other | upstream | 1190622 | 12154268 ~ 12159899 (+) |
| G44887 | NA | other | downstream | 3578 | 13394229 ~ 13409912 (+) |
| meltf | mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 | other | downstream | 581522 | 13972173 ~ 13980286 (+) |
| pomgnt1 | pomgnt1,LOC107675946,LOC107692396 | other | downstream | 1845514 | 15236165 ~ 15244280 (+) |
| G45419 | sgip1,sgip1a,LOC107739126 | other | downstream | 1968210 | 15358861 ~ 15459386 (+) |
| G45448 | LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 | other | downstream | 2174330 | 15564981 ~ 15566668 (+) |
