LOC122346505 (sox14,LOC107679857,LOC107756185,LOC107713406,LOC107694108,LOC103365676)


Basic Information

Item Value
gene id LOC122346505
gene name sox14,LOC107679857,LOC107756185,LOC107713406,LOC107694108,LOC103365676
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12262919 ~ 12264713 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241195.1
CTTTCTCAGAGCTGATTGGGCGCTCAGGTTGGCGCGTGAACGCCCTGCGATTATGTCAGATCGCGTGCAGAGCGAACCAGCCCAGCCTTTGAACTTCACCGCTTTTGGCTCTCATTCACGCGCTTCTCCTCATTTCCCAGCCAGGTGCTTCGCGGGGCGAGAATCCtccgagagaaaaaaaaaaaaagaagcgcgCAAACAGATCGCGGAAACTTCGCTTTGCCGCGCTGGATTTTGTGGCGCGCGTGGCTGTTCTTCTCTCAGCCGAATAGCGTCGTTTCGAAGAAGAGACATCTTTCAACTTTGCGACGAACGCGGAAGAATTAGTGGATTTTCCCCCCCATTGATGCCGTTTTCCTACTCCTCCGGCTTTCCAGAAGTGGCATGATCCGTGTCTGTCGGCAGGACAGGTGAATACTATTTTCTCTTGGTTGGTcgaagaacttttttttttgttgttattttaacagGGAACCGTAAAAAATGTCAAAGCCGGTAGATCACATCAAGAGACCCATGAACGCCTTCATGGTCTGGTCAAGAGGCCAGAGGAGGAAAATGGCTCAAGAGAATCCCAAAATGCACAATTCAGAAATAAAAAGACTCGGCGCCGAGtggaagctgctctctgaatcCGAGAAGCGACCGTACATCGACGAGGCCAAAAGGCTGAGGGCTCAACACATGAAAGAACACCCAGACTACAAATACAGACCCAGGCGCAAGCCCAAGAACCTCCTCAAGAAGGACAGGTATGTGTTTCCTCTGCCCTACCTGGGCGACACGGATCACCTGAAAGGACTTCCGGTCTCCGCCACGGACTCGCTCTTAGGTTCCTCGGAAAAAGCCCGCGCGTTCCTGCCTCCCACATCAGCCCCTTACTCCTTCCTCGACCCGAGCCAGTTCAGCTCCAGCGCTATCCAGAAGATGACAGAGATGCCCCCCCACACGTTGGCCACCAGCACTTTACCTTACGCATCATCTCTGGGATACCAGAACGGCGCATTCGGGAGCCTGGGCTGCCCCAGCCAGCACACCCACACCCACCCGTCGCCCACAAACCCCGGGTACGTGGTGCCGTGTAACTGCACCGCATGGTCGGCGTCGAGTTTACAGCCGCCTGTTGCCTACATACTGTTCCCGGGTATGACCAAGAGTGGGATTGACCCGTACTCATCAGCACACGCCGCTGCTATGTGACTCCACcgctaaaaaacaaacaaacggtCTCCTCTTTTGAAAACTTGAATACAGCAATGCATGTACATAAGAAGAGAGGAATGAGCAAGACATTTATACTGAGGCCGCGTGGACATGAACTTTTCACCATCTACGAGAGGTTCCTCGGATCCCAGCTCGGATCTCGGAATAGATGTAAGGCAGGTGCCCAGAACtgtaagaaatgtaaatgttcaaaCGTTTATTATTATGGCTACCGGATTTGGATgcctttaattttatttattatgtacaattTGATGCTATAATAATGCTACTTTTTGTTTCAACGCTTAATATAATTGTTCTTCtcatcatatattattattattattattattattattattatttgaatgacTTTGATTTGCACAGCTAACGGTTAGGATTCATGTTTCTTGTACAGCCTGTTGTATTTACCTTTCTTTTCGGCACTCTGAAATTCAAATGATACGACTTTAAGGGTTTCAAAGTGAGAAATTCAGCGTTTAATAGATTATACGGGTTATACTGTTTATAATGATTAAACCGGCACCTAAAAGTAGACggtcttatttaaaatatcaaatgaaaaa

Function

symbol description
sox14 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hypothalamus development. Predicted to be located in nucleus. Orthologous to human SOX14 (SRY-box transcription factor 14).

NR:

description
transcription factor Sox-14

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241195.1 True 1793 mRNA 0.47 2 12262919 12264713

Neighbor

gene id symbol gene type direction distance location
zgc:103559 zgc:103559,LOC107752646,LOC107696750,LOC107552265,LOC107733245,LOC108427664 coding downstream 168179 12088224 ~ 12094740 (-)
agxta agxta,agxt,LOC107696749,LOC107552266,LOC108427662 coding downstream 175326 12084281 ~ 12087593 (-)
dtymk dtymk,LOC107593168,LOC107694123,LOC107696762,LOC107552279 coding downstream 179379 12081977 ~ 12083540 (-)
stk25a LOC107733254,LOC107593165,LOC107694119,LOC107696758 coding downstream 200501 12055892 ~ 12062418 (-)
hdlbpa hdlbp,hdlbpa,LOC107694132,LOC107696756 coding downstream 264424 11973465 ~ 11998495 (-)
im:7152348 LOC107717945,LOC107694124,LOC107590683,LOC107752641,LOC107696753,LOC107552260 coding upstream 702387 12967100 ~ 12970628 (-)
trnap-ugg_5 NA coding upstream 706370 12971083 ~ 12971154 (-)
trnap-cgg_1 NA coding upstream 706765 12971478 ~ 12971549 (-)
bcl6aa bcl6,LOC107717934,LOC107752633 coding upstream 821387 13086100 ~ 13109224 (-)
tbc1d23 tbc1d23,LOC107731832,LOC107590650,LOC107574489,LOC107752629 coding upstream 1125990 13390703 ~ 13407082 (-)
G44501 NA non-coding downstream 834156 11428125 ~ 11428763 (-)
G44460 NA non-coding downstream 1020413 11242277 ~ 11242506 (-)
G44459 NA non-coding downstream 1020887 11241637 ~ 11242032 (-)
G44457 NA non-coding downstream 1023455 11239119 ~ 11239464 (-)
G44452 NA non-coding downstream 1024721 11237962 ~ 11238198 (-)
G44730 LOC107552274,LOC107593170,LOC107694117,LOC107696767,LOC107753639 non-coding upstream 259243 12523956 ~ 12525300 (-)
G44737 NA non-coding upstream 331133 12595846 ~ 12965513 (-)
LOC122347051 tmem131,LOC107659030,LOC107692350,LOC107732007,LOC107548642 non-coding upstream 463418 12728131 ~ 12730973 (-)
G44773 NA non-coding upstream 626003 12890716 ~ 12891336 (-)
G44784 NA non-coding upstream 720099 12984812 ~ 12985135 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 1193453 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 1277787 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 1427394 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other downstream 1546178 10710045 ~ 10716741 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 1753916 10434204 ~ 10509003 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 261043 12525756 ~ 12897718 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 1390547 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 1453489 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 1895762 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 3062870 15327583 ~ 15330851 (-)

Expression


Co-expression Network