trub2 (LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444)


Basic Information

Item Value
gene id trub2
gene name LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20070910 ~ 20073497 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241205.1
CcaatagaagaagaagaaggtcaCGCCAGAATTTGGGCAGCATGTGATATTTTCCCCCCTCTTTATTTACCTCAGATTGCATTGTTGCTTGTAACATTGGTTTCTGGGCGAAGATGACCACTCAGGCTGTACGTCTTTTCCGTAAAATGGACGGTCTGTTTGCTGTGTACAAACCGCAGGGAGTTCATTGGAAACATGTTCGTGACAACATAGAGTCCAGTTTATTAAAAGCGCTGAACTCCTGTCCTCCAGCAGCTCCTCAGCTTGCAGTGCACTTCCAGCTTCTGTCCGATGGAAAGAACAGCAGCTCGAAAGATCTCGTACCATCACCTTCTATGGTCCCCGTACTGGCAGACCATCCTCTAGTGACAGGGCCACAGTTTCATAAGGTTCACGTCGGGGTTGGTCATCGATTGGATGCTTTTTCCTCTGGGGTGTTAGTGCTGGGTGTTGGCAAAGGAAATAGAGTGCTGGAACATCTGTCCAAATCACATGTAACTCGGGACTACACGCTTGAGGGGGAGTTTGGAAAATCCACTGATAGTTTCATGGACACGGGCCGAGTTATAGAGAAAGCCACATACGACCATGTTACTCAGGATAAGCTTGAGAGAGTTCTTGCCATGATACAGGGAGCCAACCAGAAAGCCTTAATCACGTATTCTCAGGTGGATCTGCGCACTCAGGAGGCTTACGAGCTTGCAGTGAGGGGTTTATTGTATCCTCATGGTAAAAGCCCACCGATTCTGACTGGTCTGCGATGCATAAATTTCAATCCACCACATTTCACATTGGAGGTCCAGTGTGTGAATGAGACTCAGAAATATCTGTGTAAATTGATTCACGAAGTAGGACTAGAGCTGCGGACGTCTGCTATCTGTTCTGGAGTGCGTCGCACACGAGACGGTCCCTTCAAAGTAGAGAACGCACTCACCCGACAACACTGGACTGCTGACAGCATTATACAAGCTATCGCTCACTTTAGCAAGACTACTCGCAAGATCAGGAAGTCGGGAATGTACAGGCAGACTGCTGGTCAATTCAACTCAAGCGCACAGATCCAAGAGCAAACCAGAAGACAATCTGAGCAGATAAATCAAGAGCACGCTGGACTCTCAAGCTCTACTTCTGATGCAGTTGGGGACAGAAAGACACCAAGTTAAACAAATCATCTGCCTCAATTAGGATGATTTGATATCTGAATTCTGAGACGTATTTATCTGTTCGCTGTAATTTATCAACTTGTTATACGATCATCATTGTGCATCattaaagctgttttaataAGTGTCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K23497 TRUB2; mitochondrial mRNA pseudouridine synthase TRUB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241205.1 True 1293 mRNA 0.46 8 20070910 20073497

Neighbor

gene id symbol gene type direction distance location
hdhd3 hdhd3,LOC107712106,LOC107584439,LOC107673581,LOC107667329 coding downstream 703 20068870 ~ 20070207 (-)
slc2a11a slc2a11a,LOC107712104,LOC107673621,LOC107584427,LOC107667316,LOC102307538 coding downstream 14155 20051004 ~ 20056755 (-)
sfi1 LOC107712061,LOC107568189,LOC107667358,LOC107721191 coding downstream 45039 20016546 ~ 20025871 (-)
zgc:172271 zgc:172271,LOC107568196,LOC107721198,LOC107667401,LOC108440373,LOC105889207 coding downstream 54675 20009514 ~ 20016235 (-)
sirt4 sirt4,LOC107584486,LOC107712059,LOC107568197,LOC107721201,LOC107667314 coding downstream 61556 20006054 ~ 20009354 (-)
rab44 NA coding upstream 11344 20084841 ~ 20095517 (-)
slc6a22.1 slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697 coding upstream 43378 20116875 ~ 20125261 (-)
LOC122347299 LOC107683669,LOC107709781,LOC107701556,LOC107709782,LOC107704729,LOC107585716,LOC107739789,LOC107585717,LOC107585718 coding upstream 163777 20237274 ~ 20238660 (-)
hemk1 LOC107750260,LOC107712066,LOC107657999,LOC107567089,LOC107584453 coding upstream 350214 20423711 ~ 20431177 (-)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475 coding upstream 708947 20782444 ~ 20786555 (-)
G46803 NA non-coding downstream 102450 19968246 ~ 19968460 (-)
LOC122347207 NA non-coding downstream 190322 19877312 ~ 19880588 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 232863 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 268644 19801243 ~ 19802266 (-)
G46658 NA non-coding downstream 278582 19791642 ~ 19792328 (-)
G46836 NA non-coding upstream 54451 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 76050 20149547 ~ 20152787 (-)
G46842 NA non-coding upstream 100041 20173538 ~ 20174291 (-)
LOC122347561 NA non-coding upstream 166305 20239802 ~ 20240436 (-)
LOC122346791 slc6a11a,LOC107673588,LOC108440580 non-coding upstream 172211 20245708 ~ 20247348 (-)
mustn1a mustn1a other downstream 70272 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 114180 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 223478 19843044 ~ 19847432 (-)
tomm6 NA other downstream 227916 19841479 ~ 19842994 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 514968 19553317 ~ 19555942 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 22527 20096024 ~ 20102459 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 87943 20161440 ~ 20166279 (-)
G46926 NA other upstream 455682 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1275122 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2666475 22739972 ~ 22750947 (-)

Expression


Co-expression Network