LOC122346528 (LOC107731631,LOC107704508)


Basic Information

Item Value
gene id LOC122346528
gene name LOC107731631,LOC107704508
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15144790 ~ 15148085 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241228.1
ACGTAATTACAGGCGTCGTCGCGGTTTTATGACGTCTGTGTTTTGGTGCGAAGATGGCTGAACGTGAAGCGTTACAAAGAGAAATAGAGGAATTGCAAAACCTCATTAATGACTATAAAAGTAATCATGGCGACGTTCCCTCAAGTTCTACGCAGTGGGGTCATGGCAGACATGGTTCAAGGAGGGGCCGGGGTCAGAGTCGGGGTCATTCCTCACACTACACACAGTCATATTCATCACTGCCACAACCGTATGTGCCTCATTCTTCCAGCAGCTGGAGGAAAACATACTCCCTTAACAACAAGACCAACAGGACAGTTCGGAGCCTTGCGTCTCGTCCAGCTGTGGACCATCTGAACCAGCCTCACCATCACATCACCACATCTGGAGATGCCGCTACTGGAAAAAGTGCTGGACCTTTTGTAAACAGCagtgtttcatttaaaaggttGAAAGCTGAACAAATCACGGATAAATCTACAACATCTTCAATTAATGTCCAAAGTGAGACTTCAAAGGAGAGGAAAAGTGAAGCAAGTGAAAAAAGGACTGTGCTTATACCTTCAACAGGAAAAAACGATCTTGGCTGCTCATCTGCCAGCACACTAACTGAATTTGCTTCAACATCAAACGCTGAAATGAAGATAAATCCCACTTTGAAATTGTCCTCATCTGCGAACGATCACTCTATCCCTCTATCTGTCAAACCTTCAGCTCCAGTTCAAGTCAACCTTTCTACTGCTGCCTTATCCAACAGGACTGTTGTAATGCCAACAGCCAATAGAGATTGTACCACGACTTCATCTGCCTCTAACCTTCAGTCTCAGGCTTCCTTGAGTACCACAAAGCTTCAGCTTAAGCAAGACTCAGCTCAGACATGTGTAGCCTCTCCATGTCATAAGAAATCTCGGTTTACTTGGGTGAAAAACCAAGAGATGGCAAACATAAAAAGCACACCTAAGCCAGTGACCTCTGGATCCTCTCCTGGCACAGCCACCGTAAGACGAGTTTCCAGTTCCAATAAGAAGGTGTCTAGCAAGCCTAATCTTTCCCTCGGAGCTCCTAAGACCTCAAAGTACACTTGGGTGTCTTCCTCTTGCTCCTCGTCAACAGCTGGAAAAGCAAACGCCTCAACAAATATGCCACGCAAGCCCCTTTCACCCAAAACTCTTAAAGTCCCTGTAAGAACATCTCAAGGTGGACTGGAGGTAccaatgaaagaaaagagatgTGGCACAACTTCATCAAAAAAGTATAAAGCTACAGGTTCCTCCGCATCCCATGCTGACCATGCTAACAAATATCGCTGGAAAAGTGCAACAGCAAATACATCTAGCTCAATTTCTAAAACTACCCATAAGGGCACGGTCTATCGATGGACAGCTAACAAGAGTAGTCAAAAAGGGGAAAAAGTATCTGTTCTGTCCTCAAACTCCACCTACATGAACCCTAATACCACCCCACTGTCAGCTGGTGCTTTCAAGCTCAGGAGTCGTACCAAGATCATCAGAAGATCTGCTAGCAGTCCCTGCTTAGAGAGAAGATGCAGCCCCATCGTGCAGACTGTAAGGAGCCGGTATTCTTTGCAGAGAAGGACACATGCACAGGTGAAGACTCCAACCAATGCCAGGCGAACAGGGTCAAAAGTGCTGGTTTCGTTCGGCAGACACAAGCTCCGTcgtctctctctcacctccACCTCACTTGGGACCTCAAGATCAGGTCAGTTACTATGACTGCACATTCACAGAATGCTTTG

Function

NR:

description
PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241228.1 True 1759 mRNA 0.46 3 15144790 15148085

Neighbor

gene id symbol gene type direction distance location
LOC122346854 zc3h3,LOC107731631,LOC107556980,LOC107717141,LOC107692390,LOC107704522 coding downstream 24177 15092139 ~ 15120613 (-)
mafaa mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 coding downstream 58224 15082218 ~ 15086566 (-)
usp1 usp1,LOC107591200,LOC107731620 coding downstream 182218 14957029 ~ 14962572 (-)
angptl3 angptl3,LOC107704519,LOC107731634,LOC107556555,LOC107717137,LOC107692388,LOC107591184 coding downstream 215665 14924139 ~ 14929125 (-)
atg4c atg4c,LOC107704517,LOC107731653,LOC107556554,LOC107591181,LOC107692386 coding downstream 229795 14907367 ~ 14914995 (-)
adcyap1r1b adcyap1r1b,LOC107731652,LOC107717143,LOC107692394,LOC107594619 coding upstream 39077 15187162 ~ 15211981 (-)
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding upstream 98344 15246429 ~ 15256160 (-)
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding upstream 183151 15331236 ~ 15333933 (-)
sgip1a sgip1,LOC107659047 coding upstream 196844 15344929 ~ 15394123 (-)
LOC122346414 uroc1 coding upstream 446278 15594363 ~ 15600846 (-)
G45355 NA non-coding downstream 239082 14905502 ~ 14905708 (-)
LOC122346442 NA non-coding downstream 488759 14651716 ~ 14656031 (-)
G45277 NA non-coding downstream 650768 14493121 ~ 14494022 (-)
LOC122346673 NA non-coding downstream 865761 14263789 ~ 14279029 (-)
G45271 sgip1,sgip1a,LOC107739126 non-coding downstream 928514 14214638 ~ 14216276 (-)
G45543 NA non-coding upstream 37067 15185152 ~ 15239640 (-)
G45544 LOC107731621,LOC107675939,LOC107556983 non-coding upstream 85182 15233267 ~ 15745536 (-)
G45560 NA non-coding upstream 171300 15319385 ~ 15320034 (-)
G45579 NA non-coding upstream 334821 15482906 ~ 15484967 (-)
G45554 NA non-coding upstream 338578 15486663 ~ 15489101 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 951624 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1358887 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1463496 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 2247072 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 4075324 11055035 ~ 11069466 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 179498 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 341033 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 387301 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 455825 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 608224 15756309 ~ 15765107 (-)

Expression


Co-expression Network