dmrt2b (dmrt2b,LOC107684342,LOC107551024,LOC107692445)


Basic Information

Item Value
gene id dmrt2b
gene name dmrt2b,LOC107684342,LOC107551024,LOC107692445
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16384336 ~ 16388414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241234.1
TCTCAACGAGGAAACTTAAATATTGAGAAGCGGGTAAGGTGAGCTGAAACTTAGTAACTATGAGGTCAATCACAGCTTCATTCCGACGGTAGCTACATATCCACTGGCAAGCCAGGTGAGAGGCGCCTTCCAGGAAACGGCCAGATTCACTAGCACAGCTGAATGGCTTATCATTTCAAAACTCTTGCCTGTAGTTTCCACTAAGGCGATTCTTCGCTCGCGCGCTTGGAAACATAGCGGGTCTGCGCGTACGATGAGCAGCGTCGGTTCGTGAGAGCCGCTTATAAATGTCCACTAAACCGGATAGGGACCCACAGGTAGATGCGACCCACCTGGATTCCCGCAAAGCAGAATGGGCTGAAGACGCTGACGGACGGGAGGCTCCAGCGCCTCGCAGGCTCGGCCGCAGCCCGAAGTGCGCTCGCTGCAGGAACCACGGCGTCGTGTCGCGCCTCAAGGGCCACAAGCGCCTGTGTCGCTGGCGTGACTGTCAGTGCGCGAACTGTCTGCTGGTCGTGGAGAGGCAGAGAGTGATGGCAGCGCAGGTCGCCCTCCGGAGACAGCAGGCCACAGAGGGtaaaaaaggtcaaaaaaacacCTCTGTTCTCAGACGTACAGCTTACCAGCGCTACACGAGGGCACCTAGTCTCCTGGCAAAGAGTATTCTAGAGGGCTACAAGCCGCCTGTGTCAGAGGACTGGCCAAAAAGACTCCACCAACCCCCGGTCAGTGTTCgtatgaggaagaggagagcgTTTGCAGATAAAGAGCTGGAGACTGTGATGCTGGAAAGAGAGCTGAGGCAAAGAGAGATGGAAGAGTTGCCTGCGCTCCTCCTCCAGGCCGTGGTGCCGTCCGCTCCCTCTCCGTATTTTTTCCCGTTGTCAGACCCGATCATGCCCACATACATATCCAAAAGCGGCCCTCCTTTGACTGACTGTGATCTCCCTCACCATCAACACGCGCTTAAATCCAAGACTCTAGATGCACTGACAGACAGCGTCTCTCTGAGAGTGTGCGAGAACTGGGACGTTTTCAATGCGATTCGGCCTCCGCCGCGCCGTTACAGCGCAAGCCCGGGCGTCAACATGGTTAAAAACATACCGGACAGCGGGTTTTCTGATATGTCTGTCAAACCGAGAAGTGTAGTTGTTGACACTATGTCAAAGCGAGACATTCCTCCCTCGCCGAATATGCAAGACGTGCTGGTACGGTCTAAATCGCCCTACAAACGCTCCAGGTCACTGGGACTCGAGGCATCTGTGCGGATGGACCATACGGAGGGCGCAAACAAAAACCCCGTCAAAAAAGCTGTAACACAGCCATTACCGTTTTCTGTAGAGGCATTGCTCATGAGATAAAAGCTAACAATGTACAATAGCTTTCAGTTTGTTAGCataatgtattacattaatatacttTACATTAACAGCCAATGTCATTTTTTACActgtttattaatgttgtttaatgttaatatctacgtacactaatacacttttaacaTCATGACCTGCTGTATTACGAATGAACTTTACGAATTAACAGTGAACAGCAGCATTTTTTATAAAGGAACGTGAATATAGATTATGAAATGCTGTTAAAAAGCTAATTGGTAGTTCATTAAATCTGATGTATTAAGTGACGTTAACTAAGCGATGaaacttttttgtaaattgaaatttaaacagctgagcttttttaaaaaaataaataaataaataattttcaagcAAGCAGAGGAAAATGATCAAACGCTTTCTTAAATTTGCACACTCTTCATCAGGGGCTGggaaatacagtttattttaggGAATCTCTTCACTTGAACACATGTGTTTGTGCTTTCAGTTAGTGtccatttttatgcaaagctGAGGTTTTAGGTTTGAGGAATCAAATGGTTGGGAAAAACAACCCCTAGCAACTGTGAAATGGACTAGTTTGTAGCTTGGCATGCAAGTTTTTAAAGAAGCTTCCCCAACACTGCACTGAAAAGTTCAATAATCAATAACTttcttgtttaataaaatacttttgattagaacacttttgattcatttctaACTAAAGTTATTCAAATGTATAATCCTGTTGAAATCAACTATATGAAATTGTTAAATGCctagcataaaatataaatgcatcttttatACTTTATTCCCTTTTCTTCCAGTTTTCTGTTTCacaatatttgaattttatgttttctgctttaaaaaaaagactgacgTTTCTTTCTAGTATGCGTAAATAGTCATGATTAACCATGTTTCTGgagtttttcatatatttaaattccaAATCTGAAAGTCTGATGTAAACCCATAGGTAGCCGAGGATCAAATGAAA

Function

symbol description
dmrt2b Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within chordate embryonic development; determination of left/right symmetry; and muscle cell development. Predicted to be active in nucleus. Is expressed in digestive system; muscle; ovary; and somite. Orthologous to human DMRT2 (doublesex and mab-3 related transcription factor 2).

NR:

description
uncharacterized protein LOC110524750

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19489 DMRT2; doublesex- and mab-3-related transcription factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241234.1 True 2352 mRNA 0.44 3 16384336 16388414

Neighbor

gene id symbol gene type direction distance location
LOC122347428 tmem125,LOC107725195,LOC107684333,LOC107551025,LOC107594640 coding downstream 34067 16340305 ~ 16350269 (-)
tie1 tie1,LOC107731644,LOC107684058,LOC107725190 coding downstream 72683 16299579 ~ 16311653 (-)
mpl mpl,LOC107725197,LOC107594610,LOC107551019,LOC107725192 coding downstream 85411 16292195 ~ 16298925 (-)
prpf38a prpf38a,LOC107731643,LOC107725199,LOC107692408,LOC107684051 coding downstream 100190 16281389 ~ 16284146 (-)
akr1a1b akr1a1,akr1a1b,LOC107725198,LOC107692407,LOC107731642,LOC107684038 coding downstream 103419 16277857 ~ 16280917 (-)
mier1a mier1,LOC107758364,LOC107724131,LOC107684256,LOC107551013,LOC107692413 coding upstream 175536 16563950 ~ 16570461 (-)
slc35d1a slc35d1a,LOC107724140,LOC107551012,LOC107684099,LOC107758361,LOC107594604,LOC107692433,LOC108441641 coding upstream 182730 16571144 ~ 16578063 (-)
serbp1a LOC107594603,LOC107692416,LOC107758366,LOC107724138 coding upstream 214881 16603295 ~ 16609663 (-)
hsd17b7 hsd17b7,LOC107551038,LOC107758362,LOC107692446,LOC107724130 coding upstream 221866 16610280 ~ 16617199 (-)
ddr2a ddr2,ddr2a,LOC107724144,LOC107551036,LOC107594601 coding upstream 230158 16618572 ~ 16647615 (-)
G45770 NA non-coding downstream 61531 16320413 ~ 16322805 (-)
G45753 NA non-coding downstream 113228 16270902 ~ 16271108 (-)
G45752 NA non-coding downstream 114944 16268915 ~ 16269392 (-)
G45751 NA non-coding downstream 116794 16267183 ~ 16267542 (-)
G45709 NA non-coding downstream 265750 15902216 ~ 16118586 (-)
G45897 NA non-coding upstream 799042 17187456 ~ 17187794 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding upstream 1126224 17514638 ~ 17518605 (-)
G45993 NA non-coding upstream 1419207 17807621 ~ 17808115 (-)
G46000 NA non-coding upstream 1434122 17822536 ~ 17822735 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 1651950 18040364 ~ 18044630 (-)
fam183a fam183a,LOC107551015 other downstream 20316 16361167 ~ 16364020 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other downstream 323870 16059893 ~ 16060466 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other downstream 324569 16058968 ~ 16059767 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other downstream 619229 15756309 ~ 15765107 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other downstream 698851 15535386 ~ 15685485 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 428226 16816640 ~ 16830261 (-)
G45895 NA other upstream 798275 17186689 ~ 17187318 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other upstream 847376 17235790 ~ 17246386 (-)
G45910 NA other upstream 919401 17307815 ~ 17308478 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other upstream 993913 17382327 ~ 17414139 (-)

Expression


Co-expression Network