nipa1 (nipa1,LOC107716965)


Basic Information

Item Value
gene id nipa1
gene name nipa1,LOC107716965
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18205651 ~ 18207634 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241251.1
CTTCCGGGATGTAATGTTCATCGgttcatgtgtttgtgtgtgccttTCTAGTCGAGTAACAAAGCCCACAACATAACCGGCCTATGAAGGCTTCATCAGCTCAGTGAAATCAAACAGTGACATTGACAGTCCATAAAATCGCATACATTTATGGACGAGGCTTCATTCCCAGTCGTTGGTGTTGTGATTGCTGTCGTGTCCAGTTTTATCAATGGATCCACGTTTGTGCTGCAGAAAAAGGGGATACTGCGAGCCCGCAAATCAGGTGGGACTTACCTGGCTGACTGTGTGTGGTGGTGTGGTACACTTGCAAtGATTGTAGGACAAATAGGAAACTTTCTGGCATACAATGTCGCCCCTGCAGTTGTGGTCACTCCCCTCGGAGCCCTTGGTGTCTTATTTGGGGCTGTTCTGGCATCATGGCTTCTTCAGGAACATCTCAATGTCATAGGAAAACTTGGCTGCGCTTTGTGCTGTTGTGGTTCAGTCGTGctcatcattcactcacccaaatctgaaaatgtcaCATCAAGAGCAGAACTAGAGGAGAGATTAATGGACCCAGTGTTCCTGGTCTACATCTCACTGGTGGTCCTATCACTGATCCTTCTGATTGTCTGGCTTTCTCCAGCTCATGGAAAATCCAACATTATGGTGTATGTGTGCATCTGCTCTCTCCTTGGGACTTTCACTGTGCCCAGCAGCAAAGCTCTGGGACTGACTGCTCAGGAGGCCTTCGGTGAAACACCTGCAAATGATAGCAGAGCGCTTTACCTCTTTCTGGGGTTGCTGGGAATTCTCGTAGTCAGTATTCTGATCCAGTTCACCTACATCAACAAAGCCTTGGAGAGCTTCAGCTCTAATATGTTTGAGGCCATTTACTATGTGACGTTCACCTCCTGTGTCATCCTGGCCTCTGCTGTTCTCTTCAGGGAATGGACAGCACTCGGCGTGGTGGACTGTTTGGGTATCCTGTGTGGTTTCGTCACGGTGTCTGTGGGTGTTGCCTTATTACGCATTTCTCAAGAAGCTAAACTTTCTTGGAGCCAAACCAAAGTTAAAGAAAATTAAGTCAGaagtgtgatttttattgtttaataactACAGAGTCAGTTGCTAATAGTAATTAACTATTGCCGACATTTGTAACCGAccattgtaacattttatataattggaTTTTAATGTTGTTATAAAGCAGTATTAACTCATTAATTACAACACATTATTGTTTCACTtctaatgatataataaattgaagaatattttaatatataaggGACTATTTTTTAGTGCAAATGGAATAAAGTGCTTAATTACTTA
>XM_043241252.1
CTTCCGGGATGTAATGTTCATCGgttcatgtgtttgtgtgtgccttTCTAGTCGAGTAACAAAGCCCACAACATAACCGGCCTATGAAGGCTTCATCAGCTCAGTGAAATCAAACAGTGACATTGACAGTCCATAAAATCGCATACATTTATGGACGAGGCTTCATTCCCAGTCGTTGGTGTTGTGATTGCTGTCGTGTCCAGTTTTATCAATGGATCCACGTTTGTGCTGCAGAAAAAGGGGATACTGCGAGCCCGCAAATCAGGTGGGACTTACCTGGCTGACTGTGTGTGGTGGTGTGGTACACTTGCAAGACAAATAGGAAACTTTCTGGCATACAATGTCGCCCCTGCAGTTGTGGTCACTCCCCTCGGAGCCCTTGGTGTCTTATTTGGGGCTGTTCTGGCATCATGGCTTCTTCAGGAACATCTCAATGTCATAGGAAAACTTGGCTGCGCTTTGTGCTGTTGTGGTTCAGTCGTGctcatcattcactcacccaaatctgaaaatgtcaCATCAAGAGCAGAACTAGAGGAGAGATTAATGGACCCAGTGTTCCTGGTCTACATCTCACTGGTGGTCCTATCACTGATCCTTCTGATTGTCTGGCTTTCTCCAGCTCATGGAAAATCCAACATTATGGTGTATGTGTGCATCTGCTCTCTCCTTGGGACTTTCACTGTGCCCAGCAGCAAAGCTCTGGGACTGACTGCTCAGGAGGCCTTCGGTGAAACACCTGCAAATGATAGCAGAGCGCTTTACCTCTTTCTGGGGTTGCTGGGAATTCTCGTAGTCAGTATTCTGATCCAGTTCACCTACATCAACAAAGCCTTGGAGAGCTTCAGCTCTAATATGTTTGAGGCCATTTACTATGTGACGTTCACCTCCTGTGTCATCCTGGCCTCTGCTGTTCTCTTCAGGGAATGGACAGCACTCGGCGTGGTGGACTGTTTGGGTATCCTGTGTGGTTTCGTCACGGTGTCTGTGGGTGTTGCCTTATTACGCATTTCTCAAGAAGCTAAACTTTCTTGGAGCCAAACCAAAGTTAAAGAAAATTAAGTCAGaagtgtgatttttattgtttaataactACAGAGTCAGTTGCTAATAGTAATTAACTATTGCCGACATTTGTAACCGAccattgtaacattttatataattggaTTTTAATGTTGTTATAAAGCAGTATTAACTCATTAATTACAACACATTATTGTTTCACTtctaatgatataataaattgaagaatattttaatatataaggGACTATTTTTTAGTGCAAATGGAATAAAGTGCTTAATTACTTA

Function

symbol description
nipa1 Predicted to enable magnesium ion transmembrane transporter activity. Acts upstream of or within axon guidance. Predicted to be integral component of membrane. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 6. Orthologous to human NIPA1 (NIPA magnesium transporter 1).

NR:

description
magnesium transporter NIPA1 isoform X2

GO:

id name namespace
GO:0015693 magnesium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG:

id description
K19364 NIPA1, SLC57A1; magnesium transporter NIPA1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241251.1 True 1323 mRNA 0.43 5 18205651 18207634
XM_043241252.1 False 1314 mRNA 0.43 5 18205651 18207634

Neighbor

gene id symbol gene type direction distance location
nipa2 nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725 coding downstream 417 18198983 ~ 18205234 (-)
LOC122346611 fndc9,LOC107673533,LOC107585156,LOC107711090,LOC107716964,LOC107580334,LOC107685295 coding downstream 14128 18187428 ~ 18191523 (-)
chst7 chst7,LOC107711096,LOC107673531,LOC107585159,LOC107685297,LOC107753406 coding downstream 49686 18154549 ~ 18155965 (-)
rp2 rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570 coding downstream 89274 18110646 ~ 18116377 (-)
jade3 LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568 coding downstream 96536 18099864 ~ 18109115 (-)
LOC122346396 gabrg3 coding upstream 156204 18363838 ~ 18455787 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding upstream 250493 18458127 ~ 18488874 (-)
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding upstream 495220 18702854 ~ 18705732 (-)
LOC122346645 LOC106676354,LOC106674584,LOC106676400 coding upstream 535431 18743065 ~ 18744116 (-)
LOC122347578 LOC107678224,LOC107752100,LOC107581387 coding upstream 555611 18763245 ~ 18765483 (-)
G46092 NA non-coding downstream 88069 18117356 ~ 18117582 (-)
G46074 NA non-coding downstream 108161 18097068 ~ 18097490 (-)
LOC122346732 nit2 non-coding downstream 138702 18062781 ~ 18066949 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding downstream 161021 18040364 ~ 18044630 (-)
G46000 NA non-coding downstream 382916 17822536 ~ 17822735 (-)
G46140 NA non-coding upstream 42300 18249934 ~ 18250635 (-)
G46160 NA non-coding upstream 125209 18332843 ~ 18333266 (-)
G46172 NA non-coding upstream 152045 18359679 ~ 18359981 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding upstream 396357 18603991 ~ 18686824 (-)
LOC122346470 NA non-coding upstream 435088 18642722 ~ 18643353 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 431544 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 791512 17382327 ~ 17414139 (-)
G45910 NA other downstream 897173 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 959265 17235790 ~ 17246386 (-)
G45895 NA other downstream 1018333 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 436672 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 498989 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 506540 18714174 ~ 18717488 (-)
G46478 NA other upstream 847512 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 907427 19115061 ~ 19149731 (-)

Expression


Co-expression Network