LOC122346546 (dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933)


Basic Information

Item Value
gene id LOC122346546
gene name dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18702854 ~ 18705732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241259.1
CCGCCGAGGGGCGGGGCTTAGCAGAAACCGGAAGAGCAAAGTGTTCGAGCGGTGCACATGATTGGAAACCAAAACAATGAAGGCGATCATTCAACGAGTAACAAAGGCAAGCGTAACAGTCGGGGAGGAGCAGATCAGCTCCATAGGCAGAGGGCTCTGCGTCTTACTCGGCATCTCACTGGAGGACACGCAGAAGGACGTGGACTACATGGTACGGAAGATTCTGAACATGCGTCTGTTCGAGGATGAGAACGGCCGTGCCTGGAGCCGCAGCGTGATGGACAGAGAGCTGGAGGTGCTGTGTGTGAGTCAGTTCACTCTGCAGTGTATCCTCAAGGGAAACAAGCCTGACTTCCACTCTGCCATGCCGGCCGAACTGGCCCAGCCCTTCTACAACAGCATGCTGGAGCAGCTGAGGGAAGCGTATAAACCAGAATGCATCAAAGATGGGCAGTTTGGTGCAAAAATGCAGGTACTCATACAAAATATTGGACCTGTGACCATTCAGCTGGAGTCTCCTGCTGGCCCTACAGACCCTAAACTGCTGTCCAAACAAGAGAAGCAACTACAGCGTAAAGAAAAAACACGGTCGAAAGGCCCCTCTGAgtccagcagagagaaggcagCTCTTCGCTCGAAAGCAGACCCCAGTGCCAGCAGCGGAGCCGAGGGAGACGTGTCCTCTGAACGAGAACCATAAAGTACCTCACGgattttgcACCTTGCATATCCATCCAGCTTCCAGTGGAATGCTGCTGTCTTCAGGGACGTCTTTCAGTGCAGCTCATACAGCTGACCTCTGTCTTATCATTTTCCCTCTCAAATGTCCGCTATAGTGCCCAGTCTGATTTTCTTCTGAAACCGGGTTTGTATATAAACATAAGAACAAGCGGCAGCTCCACATTTACTAGTAGAAAAAAGACTCAGGCACACATCAGtggtgttttagcaccactttGAACACATTATCTGAATATTTACTATGCCATctaatttattgaaatgtatacatctctgtaatgtgttttaataaaaacaggagagaaaaa

Function

symbol description
dtd1 Enables Gly-tRNA(Ala) hydrolase activity. Predicted to be involved in tRNA metabolic process. Predicted to be active in cytoplasm. Orthologous to human DTD1 (D-aminoacyl-tRNA deacylase 1).

NR:

description
PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase 1-like isoform X2

GO:

id name namespace
GO:0019478 D-amino acid catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K07560 dtd, DTD; D-aminoacyl-tRNA deacylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241259.1 True 1049 mRNA 0.49 6 18702854 18705732

Neighbor

gene id symbol gene type direction distance location
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding downstream 213980 18458127 ~ 18488874 (-)
LOC122346396 gabrg3 coding downstream 247067 18363838 ~ 18455787 (-)
nipa1 nipa1,LOC107716965 coding downstream 495220 18205651 ~ 18207634 (-)
nipa2 nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725 coding downstream 497620 18198983 ~ 18205234 (-)
LOC122346611 fndc9,LOC107673533,LOC107585156,LOC107711090,LOC107716964,LOC107580334,LOC107685295 coding downstream 511331 18187428 ~ 18191523 (-)
LOC122346645 LOC106676354,LOC106674584,LOC106676400 coding upstream 37333 18743065 ~ 18744116 (-)
LOC122347578 LOC107678224,LOC107752100,LOC107581387 coding upstream 57513 18763245 ~ 18765483 (-)
LOC122346582 LOC107584426,LOC107673614,LOC107712092 coding upstream 280318 18986050 ~ 18988440 (-)
cnga3a LOC107585144,LOC107711084,LOC107673541,LOC107685324,LOC107733584 coding upstream 365673 19071405 ~ 19078891 (-)
hdac7b NA coding upstream 407946 19113678 ~ 19123976 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding downstream 16030 18603991 ~ 18686824 (-)
LOC122346470 NA non-coding downstream 59501 18642722 ~ 18643353 (-)
G46172 NA non-coding downstream 342873 18359679 ~ 18359981 (-)
G46160 NA non-coding downstream 369588 18332843 ~ 18333266 (-)
G46140 NA non-coding downstream 452219 18249934 ~ 18250635 (-)
G46432 LOC107752101,LOC107678225,LOC107581302,LOC107551936,LOC107753899,LOC107672678 non-coding upstream 55852 18761584 ~ 18762435 (-)
G46439 NA non-coding upstream 151980 18857712 ~ 18858471 (-)
G46444 NA non-coding upstream 177120 18882852 ~ 18886400 (-)
G46463 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 non-coding upstream 264438 18970170 ~ 18972370 (-)
G46476 NA non-coding upstream 337884 19043616 ~ 19043869 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 57720 18644306 ~ 18645134 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 928747 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 1288715 17382327 ~ 17414139 (-)
G45910 NA other downstream 1394376 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 1456468 17235790 ~ 17246386 (-)
LOC122347235 NA other upstream 891 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 8442 18714174 ~ 18717488 (-)
G46478 NA other upstream 349414 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 409329 19115061 ~ 19149731 (-)
tsfm tsfm,LOC107711018,LOC107585120 other upstream 847585 19553317 ~ 19555942 (-)

Expression


Co-expression Network