LOC122346582 (LOC107584426,LOC107673614,LOC107712092)


Basic Information

Item Value
gene id LOC122346582
gene name LOC107584426,LOC107673614,LOC107712092
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18986050 ~ 18988440 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241306.1
ATGAAGCCCAATGTCTGGAATATAAAGGAGATGTTGAATATCCCTGCAACGTCTGGAGGGATAAAAACTGGTAAGGGTCCTGGAACCAGTGACTACTCCAGCCTGAGTGACTCCCAGTTTCTCTTGGGCTCTCAAATGTGGCCTGACAATTCACAAGGGTTTACTCAGGAGATGAGTGGACAGAGCAAAGGTTCTCAGCATACCTCACAGGAAATGAAGGAAATTATGATGTCCAGCAGCTATAGCTCTAAGCCGCTGTTGTTTGGTGGTGATGGCAAAATCTCAAACTTCACCAGTAGCAAATATGTTGGCATGTTAGACAAATttgaggaggagaagagaaaagccaaagaaaaatatgaaagggAAATTCTCACTCATGGAATTCTACAACTGCAGGAATCTCTGGAAAATACCAGAGAGACTTTGTTAAATCGTATTGATGGAAGTAACGACATAACCAAAGTTGTAATGGAAAAATTGGacactttttcaaaaacaaTTGAATGTTATTTAAACAGTGTGAAAGAAGGTATAACATATCAGTTTGAGACTCTGCAGAGCCGAACACAAATAGATATGGGAGACAGGGATGCCAAGtgCAGTCTGGCTGCAGAAGAGTTAAGCTCAGGCATGCTTAACCTCCAACAGGATCTGGAACATCTGAAAGCAGAGCAGAGCAAAGAGCAGGGCATGCTGGGAAAAATTCTGTCTCAGCTTAGCAATTTGATTTCTATTCACAAGCCGATGACAGGACCTGGCTCTGCTAGAATGATTGACAGTGAGGTTCAGACATCACCCAGTTTATTACAGAGGTTCTGTGTCATATTAGCTGAAAAAGAACACGAGAGCAAGATGATACGCAACAGGCCTGTCATTTATTCAGGAAAAGCAACAGAGCAGAACCAGTGTCCGCTTACAACACAGAAGACACGAAACAGAAATGCACATGCTCTGCCTGAAGAAAGACAGCAGACAGTAGTCACAGAGGAGGTTTCCTTGAATGCTTTGCAGAGTTTATGGGGCACACAATTAGTCGAGAACATAGAGGACCATGGAGGACAGTATGTAGACCAGAAGCCTCAAAAACCACTGCAATTGAGAGAGAGCCGATTTGTCACTGATGCGATGCCACCACTAAAAATACCTAAGAGGCGCCAAAAACCACTGAATTATAGGGGGAAAAAGAGAGCCCTGGTTCTGCCCCAAAGACAgtcggtaaaaaaaaaagaagcaagtTTTTCAAAGGGCAGCCAGCAGAATGAAGACCTTCAATTTGATCAAAAAGACAGAGAACCTTTGGCTTCCCTTTGTGGCAACTGGAACATGACCAAGTCTGTTGGAGGGGATCACCTAAAACTACAGCAGCAGGCGACTGTAGCACCAGTCAGTACGTGTGTAGCTGAACAACCACTAAACCCTTTCAGTTTGTGGTCTGAGGACACAGACAGCTCCCAACTGATGGTGGAAAATGGGGTTTTTGAACCAAAAGCTAGTGTCATAGAAGGAGAAGACGGCCTCTGGCAGCTTTTTGACTTCACTAATGACTCAGAATAAGATGC

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 36-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241306.1 True 1562 mRNA 0.44 7 18986050 18988440

Neighbor

gene id symbol gene type direction distance location
LOC122347578 LOC107678224,LOC107752100,LOC107581387 coding downstream 220567 18763245 ~ 18765483 (-)
LOC122346645 LOC106676354,LOC106674584,LOC106676400 coding downstream 241934 18743065 ~ 18744116 (-)
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding downstream 280318 18702854 ~ 18705732 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding downstream 497176 18458127 ~ 18488874 (-)
LOC122346396 gabrg3 coding downstream 530263 18363838 ~ 18455787 (-)
cnga3a LOC107585144,LOC107711084,LOC107673541,LOC107685324,LOC107733584 coding upstream 82965 19071405 ~ 19078891 (-)
hdac7b NA coding upstream 125238 19113678 ~ 19123976 (-)
tns2b LOC107711076,LOC107673525,LOC107585141 coding upstream 164599 19153039 ~ 19173171 (-)
eif4bb eif4bb,LOC107673526,LOC107711078,LOC107585139,LOC107582715,LOC107733597 coding upstream 187426 19175866 ~ 19187427 (-)
LOC122347293 LOC107711003,LOC107667371,LOC107585181,LOC107673453,LOC107711002 coding upstream 200055 19188495 ~ 19190509 (-)
G46463 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 non-coding downstream 13680 18970170 ~ 18972370 (-)
G46444 NA non-coding downstream 99650 18882852 ~ 18886400 (-)
G46439 NA non-coding downstream 127579 18857712 ~ 18858471 (-)
G46432 LOC107752101,LOC107678225,LOC107581302,LOC107551936,LOC107753899,LOC107672678 non-coding downstream 223615 18761584 ~ 18762435 (-)
G46421 NA non-coding downstream 264882 18656842 ~ 18721168 (-)
G46476 NA non-coding upstream 55176 19043616 ~ 19043869 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding upstream 56188 19044628 ~ 19048836 (-)
LOC122347223 NA non-coding upstream 161306 19149746 ~ 19151694 (-)
G46509 NA non-coding upstream 224199 19212639 ~ 19242811 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding upstream 405037 19393477 ~ 19397730 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 268562 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 278454 18706623 ~ 18707596 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 340916 18644306 ~ 18645134 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 1211943 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 1571911 17382327 ~ 17414139 (-)
G46478 NA other upstream 66706 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 126621 19115061 ~ 19149731 (-)
tsfm tsfm,LOC107711018,LOC107585120 other upstream 564877 19553317 ~ 19555942 (-)
tomm6 NA other upstream 853039 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 854604 19843044 ~ 19847432 (-)

Expression


Co-expression Network