LOC122346586 (p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396)


Basic Information

Item Value
gene id LOC122346586
gene name p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18968907 ~ 18975022 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241308.1
CGCTTCAAGTAGGAGACGAACAAGTGCGTTGGAGATGCGGCAGTTGTCAGGGGAATGGCGTCCCTCGAAAGTATAGTCAGCTGCGGATTCACTTCGAGATGTACAACTAAGGAAGCTGGCAGATAAATTCTAATCATTACATgcactgctaaaaaaaactcTTCGCAAGGATTTTAAAGAGAATGAATTTCAAAATGGTGCGTTGGCGCAACCGCCCGCAGGATACCAGAAGCTGCGCAGTTGCTATAATCACGCGTCTCGATGTAAACAAGAGAGGGAATGTTGACAACTGGAAGTGCTGAGTAAGCCAGAGAGTGTCATGCTACCACAAGCCGGAGATCGATAAAAACCTCGTCTGCCAAAATGATGGAAGCCCAGGACATTATTGAGGAGGATGACACCGCAGCATCagcaccatcatcatcatcagcgccGCCACCGCGAGCTCTGCCCCGTCAGCGCGTTTCTCTGCAGAAGAGCAGCGTGTGTTCTCGCTCCTACTTTATGGTGGTGATGGTTTTTTTCCACGTTTATATAATCAATGTCATTGCACTTCTGCTCTACGTTCATTACAATAACGGATCTAACGCGATAACGGCAAACCGGGATTTTACAAGGAGAGATAACAGTCATAAAGTTACCGGAGCATCTGACCCGCAGCCCCCTGCAGACTCGGGCTTCCCTCGAAATATGTATCTTCCTCGCATTGAAGGAATACGGgtggGCCATGTCCAGAAAGTGTCACTGGTGCCAGGGAAAGTCCATGAGATGAAGACACTCAGTCTAAAGCCCCTTCTGTTTGAGATCCCTGGGTTTCTGTCAGAGGAGGAGTGTGGTGTAGTTGTGCGTCTGGCTCAGCTGAAGGGTTTGATGGAGAGTCAGGTTATGGTCCCTGAAGGTCAAGAGGAACTTAATCAGCAGCTTAACCTCAGTCCTGAGGAAATCTTCAATTTCCTTGACCTCAATCAAGATGGCCAGCTGCAACCGCATGAGATTTTGACACATTCTCGAGTGAGAGATGGAATCTGGTTAACTTCTGAAAACCTTAAGGAAATCTATGATGGCCTAAAGGTTGATCAGGATGGAGATGGTCTTTTAAATTTAGAGGAGTTTAGGCATCTGAAAAGTGATGCCTTTCAGCGTTTTTTGCTTCAGCGTGGGGTGGAGAGGAGTCAGCTGGTGAGGAACAGCAGACACACCTGGCTCTACCAGGGTCAGGGAGCACATCAGGTTCTTCAGGACCTCCGCAAAGTCACTCGTTTAACGCGACTACCATCCTCACTGGTGGAGTTAAGTGAACCTCTACAAGTGGTGCGTTATGAGCAGGGTGGCCATTACCACGCTCATCATGACAGTGGGCCAGTGTACCCTGAAACAGCTTGCACACACACTCGCCTCGCTGCCAATACCACCTCCCCATTCCAGACGTCCTGCAGGTACATCACAGTTCTGTTTTACCTTAATAATGTAGAAGAAGGGGGCGAGACCACCTTTCCAGTGGCAGATAATAGGACTTACGAAGAAGCGTCACTGATACAGAATGATGTGGATCTGTTGGACACCAGGAAACATTGTGATAAAGGCAACCTGAGAGTGAAGCCCATTAAGGGGACGGCAGTTTTCTGGTACAACTATCTATCTGATGGTAGAGGTTGGGTTGGTGAACAGGACGAGTACTCTCTTCATGGTGGCTGTGTGGTGACACGTGGGACTAAGTGGGTTGCCAATAATTGGATCAATGTCGATCCAGACTACCAGCGGCAGGCACGCTACCAACAGTTCGTTTCTCAACAACAAGAGACGCAAGAGCAAGAAGAACTCATGTCAGAACTGAACTCAGACCAGCACATAGAAAGACACCAAGAcctataaacacatacatataaatccAGGTACAACAATGCACATATTTACACATTCACTTCTGTGTTACAATCTATGTATAGTCATTCACTTCCTCCTTCACACACGCATTCAGGCACAGTTCATTGCCTCTGCATCACTCATACACCCTGAAGCACTGACCTCGtaccaacaaacaaaacaaacaaaagcaccCCCTCCCCTTTGTACTTTATGTTTGGTTTGCTCTTCCCTAAATACAGTTGCACACTATAGAAATGTAGCCCTACCAACATTTCCTCATATTCAGAATTGAATGAGCTTTACTCAATCTCAGCGGTCCCAGTGTTGAGGCTGGAACTTTTGTTGGGTTGGATTCAGGGATAAACAGCCTGGGATTTATGCAATTGTGAAAGACAATGCTACTGTTCCTAATGTAGATATTTGAtggcattattatttattttttcatgggAATGCAGCCATATTCAGCGACTTTGTTTACACACAGAAAGACACTCTACTGTACCTTCCAAAGGCCGTACACACCGCAGCTAAATGTTAATGCATCGATAGTAAATAGTGCATACGAGATTTGTGGCTCTTTACTCTATGTGTTTTAACTTGCGATTTCGGTGACATGTAGTAAATAAACTGCTGTCAGTAAGGGCTGCATGACTAATCGGAAAAAAAATCACGAACATGATTCATACATAAATGCGATCTTATTTTGAAATGGCGGCAACACATTCCATGTCCTGTCTGAAAGGCACATAATGTGGACGGTGCACAGATGATCAACACCACTAATCTCTACAATCATCTCAAGCGTCACCACAAAATAGGAGAGGTTCTTGagtgcaaaatatttttgttgaaaaatttGAATCGTGTATGAAAATTATGATCTTAATTCCCATTGAGAAAAATCGTGATTCACATTTTAGCAAGAATTGTGCAGCCCGACTGTCAGTGTACAAGCAAACTTCACAATTGCTGGAGGATGTAGTGTGTACTGGCCAAAGAGTgtggaaaaaatgtatgttattgcTTTCTACTGAAGTGACATTTACACTGACATCTAAATCACATAACACTTAAGGAAAGTTATCTGCAGGGACACAGTCAGCATTGACTAGTTATGTCAATGGACTACAGGTTAGTTTAATtgtaactattaaaaaattattaagattttaacCTATGTAACATCTAGTCAGCCTCCATCTCTGCCAGGATGTTTCTTACACTTATTTCCTCTCAGATGTTCCTGAAAAGAAGCATGTAAAACTTGCACAATCTTGTATACTTTGTttggatttaatttattttgtaatgttttttctttgtcaatTGCAGTGCATCCAAAGACTTGACTGAagttaacttattttatttatttgttggattgttgttaaaatgcacagaatcactttttgtcaaataaattaaaccaaCCAATCATA

Function

symbol description
p4htm Enables 2-oxoglutarate-dependent dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to act upstream of or within regulation of erythrocyte differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
PREDICTED: transmembrane prolyl 4-hydroxylase-like

GO: NA

KEGG:

id description
K06711 PH-4; hypoxia-inducible factor prolyl 4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241308.1 True 3308 mRNA 0.43 10 18968907 18975022

Neighbor

gene id symbol gene type direction distance location
LOC122346576 myhb,LOC107721187,LOC107568178,LOC107667337,LOC108254796,LOC108443910,LOC108271865 coding upstream 1006 18952387 ~ 18967901 (+)
LOC122347579 LOC107678225,LOC107752101,LOC107581302 coding upstream 206129 18759996 ~ 18762778 (+)
gabrb3 gabrb3,LOC107711086,LOC107673538,LOC107585149,LOC107685288,LOC107582723,LOC107733605 coding upstream 437473 18488910 ~ 18531434 (+)
oca2 oca2,LOC107716962 coding upstream 635632 18255522 ~ 18333275 (+)
herc2 herc2,LOC107716961 coding upstream 713816 18208798 ~ 18255091 (+)
LOC122346580 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding downstream 7108 18982130 ~ 18985288 (+)
ube3a ube3a,LOC107711083,LOC107582722,LOC107585142 coding downstream 86736 19061758 ~ 19071270 (+)
stk35l stk35l,LOC107711082,LOC107585147,LOC107673595,LOC107733606,LOC107685285,LOC105016730 coding downstream 112643 19087665 ~ 19096644 (+)
bin2b bin2b,LOC107673593,LOC107711079,LOC107685284,LOC107585145,LOC107582721,LOC107733580 coding downstream 126196 19101218 ~ 19108709 (+)
slc48a1b slc48a1b,LOC107585148,LOC107711080,LOC107733581,LOC107685336,LOC108441111 coding downstream 135166 19110188 ~ 19113563 (+)
G46252 NA non-coding upstream 7512 18957330 ~ 18961395 (+)
LOC122346587 NA non-coding upstream 31019 18936732 ~ 18937888 (+)
G46242 NA non-coding upstream 82436 18882800 ~ 18886471 (+)
G46240 NA non-coding upstream 102067 18864092 ~ 18866840 (+)
G46237 NA non-coding upstream 110436 18851200 ~ 18858471 (+)
G46260 LOC107673608,LOC107712089,LOC107584440,LOC107568175 non-coding downstream 14570 18989592 ~ 18993546 (+)
G46261 NA non-coding downstream 20316 18995338 ~ 18996420 (+)
G46275 NA non-coding downstream 80194 19055216 ~ 19056131 (+)
G46272 LOC107585146,LOC107711077,LOC107673565,LOC107733590,LOC107667372,LOC107582718 non-coding downstream 143030 19118052 ~ 19133603 (+)
trnaq-uug_14 NA non-coding downstream 177080 19152102 ~ 19152173 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other upstream 351949 18577178 ~ 18616958 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other upstream 802665 18156655 ~ 18166242 (+)
G46022 NA other upstream 972190 17995191 ~ 17996717 (+)
G45894 NA other upstream 1781599 17186708 ~ 17187308 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 3402239 15564981 ~ 15566668 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 287562 19262584 ~ 19347629 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 590989 19566011 ~ 19594008 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other downstream 809155 19784177 ~ 19786297 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other downstream 868025 19843047 ~ 19846548 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other downstream 891537 19866559 ~ 19873535 (+)

Expression


Co-expression Network