slco2a1 (LOC107753639,LOC107694117,LOC107552274,LOC107593170,LOC107696767,LOC107752643)


Basic Information

Item Value
gene id slco2a1
gene name LOC107753639,LOC107694117,LOC107552274,LOC107593170,LOC107696767,LOC107752643
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12881334 ~ 12897897 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241313.1
ATAATCCCCCATAGACGGTCACCGATGTGGAAACGTGTCTAGTTCATCCTTGTCGAAACAAGCCTAACAACCAACTTCACCTTGTGTAGGAAAACATGGACATATACGCCAAAGACATAAAGAAACCCAAGCCAGCGTTGTTTTGTAACATAAAGTTCTTTGTGTTCTGTCATGGCCTGCTCCAGCTCACTCAGCTCTTGTATAGCTCTTACTTCAAGAGCACCATCACCACAATCGAGAGACGCTACGGCCTGGACAGCCTCTCCTCAGGAACCATCTCTTCCCTCCACGAGGTAGGGAACACATTGCTTATAGTGTTCGTTAGTTACATGGGTAGTCGAGTTCACCGACCTCGATTCATTGGACTGGGTGGCCTGCTAATGTCCATCAGTGCCATGATCTTAGCTCTACCTCACTTCCTCTCTCAGCCCTACAACTTTGACTCCGTCCTGCATGCGAGCAAACAGGACATGTGTTATTTGCATGCGAATGCAACGGGTGCTGAGGCTTGTGGTCAGGAGGATTCCCGGAAGCTTGTGGACACCAGTAAATTTTGGGTGTTAATGGCTACAGCCCAGCTGCTGTTCGGAATCGGTTCAGTCCCCATCCAGCCTTATGGAATATCTTACATCGATGACTTTGCAGGAGTTGGGAATTCCGCTCTCTATATTGCTATTCTCTTTGCTGTGTCAGTGGTTGGGCCGTCCTTTGGATACCTCCTGGGCTCTGTGGTTTTGCGGATTTATGTGGATGTGGATAGAGCCAGCTCAGAGAAGGCGTTGCAGTTGACCCCTGCTGACCCTCGATGGCCTTTTGAAATGCAaggtgacatcgtaaaagaagaCCCCAAGAAGACAGAGGGCCCCATGCTGGATTTCTTAAAAATGTTCCCTAAGATGTTCGTTAGGCTGCTGCTGAGTCCTGTCTTCATGCTGCTGGTTCTGACCCAATGCTGCTTCTCCTCCGTTATCGCTGGACTTGCCACCTTCCTCAGCAAATTTCTTGAGCGGCAgtacagcacctctgtggcctACGGCAGCCTTCTCATTGgTGCTTTAAACCTGCCGTCCATCGCTGTGGGGATGGTGCTCGGGGGTCTGATCATGAAACGTTGGGGGTTGTCGTTCAGAGCCATTCCACGCTTCTCTGTTGTAATGCTCACCATCTCCATCTTCTGCTGTATACCCCTCTTCTTCATGGGCTGCCCCACGCAAGATGTTGCTGGTGTTTACGGCGTTAATGGGCTTCAGCCGTCCTGTAGTGCCAATTGCTCCTGTCCCAGCAGCGCGTTTAACCCAGTGTGTGGGGAAAACAACATTGAATACATCTCGCCCTGCCATGCTGGCTGCACAAACTTCACCTTGGATCCCAACAGCCAATACAGAGTCCAGAGTTACAGTAACTGTCAGTGTATTCCCGGTGTGGCCACAGCCAAGCCTGGCCCTTGTGCCAACAGCTGCCCTCACTATCTCCTGCCTGTGATGCTCCTTATATCTCTGGCTGGATTTATAGCCAGCCTAACACACAACCCCATCTACATGATGGTGCTCAGGTCAGTACCTTCAGAAGAGAAGTCCTTCGCAATCGGCGTACAGTTTCTGCTTCTGAGGGTTCTGACCTGGCTGCCAGCTCCGGCTCTATTTGGGATGACCATAGATTCCACGTGTATCTGGTGGAAAATTGCTTGTGAGAAAAAGCAAGGATGTGGTTACTATGACAACAACCTCCTTAGAAACAGGTATCTAGGACTGCAGGTGGGCTTTAAGACGGTAGGCATTGCGCTCCTGGCATTTATTGGCTGGAAAATGCAGCGGACCAGAGAGTACAGCTTAGAGAACAAGCCAGAGGGACCCCTGTGATGCCTCGACTCTGCTTAGCCCATCGCAGCTCACTTTTGAGAGCCCTCTCAGTGAATTGAGCCCCTGGATATTTCTCGTCAGAAACCCTCCTCCTTTCAACATCTGGCTGGAAATGCGATGAATTCAGTTTGGACTTTTCTCAAGTTGTGCACTAACTTCTTGGGTATTTATTTCCACCTGCGGAGCAATAACTGGACAGATTCAGGGATTTTCCAACTTCACACAGTTTTTCTGGTATTAATAATTAACTACGTATAGCACTATAAACAGTTTATCATACTTTATAGCCACGGCTCTCGTCAACGGACGGTGGCGTCTTTGGAGAGGTCACAGAACTTGTGACAGAAATGTCTGTATGTTGTCCTTAAGATTTGGTTAATACGCAATTTGatgattcatttcttttctttttttggtgtaTGTGTATTTGAAGACTATGTGAAGGATGCGGGGCGCTCTTTATACCCAAATGCACACAGATACACACGAGTGTGTCGAATATCAAGCTGTGTGTGAGTTGAGGCGTGTGTAGcttcaaataattattgtagCCCGTAGCAGATTTCAAATTATACTTTCAAAtgtgaagacattttgaaaataagcaTCAAAAgtttgtacaatatatttttatacctgataatgctgttttattatacactttgtgcttgtttttaatttttaatttttttttttgctcttaaaacaaatgacaacaTGCTTTTATAATTGCTGCTTGGAGTAATGAATCGTGACTTTCTAAGTCTTTATTATTCAATATGTAACATATATTTACCAATGTGTaacttatttcaaatataaaatttgttcacaatt
>XM_043241315.1
TACACAATattatacacaatacaaaataaatatgcagataTTGTGTTGGAAAAAGCGGCAGAGAACCAATGTGATAAAGCGTAAATGAAAAGCTGATGCCTCTATGAAaatccttttgattttttttattttcccccTGATTTCCTAGAACGCATAAAGCAGCCTGCCAGGGCTTAAATGCTTGAGTTCTTTGTGTTCTGTCATGGCCTGCTCCAGCTCACTCAGCTCTTGTATAGCTCTTACTTCAAGAGCACCATCACCACAATCGAGAGACGCTACGGCCTGGACAGCCTCTCCTCAGGAACCATCTCTTCCCTCCACGAGGTAGGGAACACATTGCTTATAGTGTTCGTTAGTTACATGGGTAGTCGAGTTCACCGACCTCGATTCATTGGACTGGGTGGCCTGCTAATGTCCATCAGTGCCATGATCTTAGCTCTACCTCACTTCCTCTCTCAGCCCTACAACTTTGACTCCGTCCTGCATGCGAGCAAACAGGACATGTGTTATTTGCATGCGAATGCAACGGGTGCTGAGGCTTGTGGTCAGGAGGATTCCCGGAAGCTTGTGGACACCAGTAAATTTTGGGTGTTAATGGCTACAGCCCAGCTGCTGTTCGGAATCGGTTCAGTCCCCATCCAGCCTTATGGAATATCTTACATCGATGACTTTGCAGGAGTTGGGAATTCCGCTCTCTATATTGCTATTCTCTTTGCTGTGTCAGTGGTTGGGCCGTCCTTTGGATACCTCCTGGGCTCTGTGGTTTTGCGGATTTATGTGGATGTGGATAGAGCCAGCTCAGAGAAGGCGTTGCAGTTGACCCCTGCTGACCCTCGATGGCCTTTTGAAATGCAaggtgacatcgtaaaagaagaCCCCAAGAAGACAGAGGGCCCCATGCTGGATTTCTTAAAAATGTTCCCTAAGATGTTCGTTAGGCTGCTGCTGAGTCCTGTCTTCATGCTGCTGGTTCTGACCCAATGCTGCTTCTCCTCCGTTATCGCTGGACTTGCCACCTTCCTCAGCAAATTTCTTGAGCGGCAgtacagcacctctgtggcctACGGCAGCCTTCTCATTGgTGCTTTAAACCTGCCGTCCATCGCTGTGGGGATGGTGCTCGGGGGTCTGATCATGAAACGTTGGGGGTTGTCGTTCAGAGCCATTCCACGCTTCTCTGTTGTAATGCTCACCATCTCCATCTTCTGCTGTATACCCCTCTTCTTCATGGGCTGCCCCACGCAAGATGTTGCTGGTGTTTACGGCGTTAATGGGCTTCAGCCGTCCTGTAGTGCCAATTGCTCCTGTCCCAGCAGCGCGTTTAACCCAGTGTGTGGGGAAAACAACATTGAATACATCTCGCCCTGCCATGCTGGCTGCACAAACTTCACCTTGGATCCCAACAGCCAATACAGAGTCCAGAGTTACAGTAACTGTCAGTGTATTCCCGGTGTGGCCACAGCCAAGCCTGGCCCTTGTGCCAACAGCTGCCCTCACTATCTCCTGCCTGTGATGCTCCTTATATCTCTGGCTGGATTTATAGCCAGCCTAACACACAACCCCATCTACATGATGGTGCTCAGGTCAGTACCTTCAGAAGAGAAGTCCTTCGCAATCGGCGTACAGTTTCTGCTTCTGAGGGTTCTGACCTGGCTGCCAGCTCCGGCTCTATTTGGGATGACCATAGATTCCACGTGTATCTGGTGGAAAATTGCTTGTGAGAAAAAGCAAGGATGTGGTTACTATGACAACAACCTCCTTAGAAACAGGTATCTAGGACTGCAGGTGGGCTTTAAGACGGTAGGCATTGCGCTCCTGGCATTTATTGGCTGGAAAATGCAGCGGACCAGAGAGTACAGCTTAGAGAACAAGCCAGAGGGACCCCTGTGATGCCTCGACTCTGCTTAGCCCATCGCAGCTCACTTTTGAGAGCCCTCTCAGTGAATTGAGCCCCTGGATATTTCTCGTCAGAAACCCTCCTCCTTTCAACATCTGGCTGGAAATGCGATGAATTCAGTTTGGACTTTTCTCAAGTTGTGCACTAACTTCTTGGGTATTTATTTCCACCTGCGGAGCAATAACTGGACAGATTCAGGGATTTTCCAACTTCACACAGTTTTTCTGGTATTAATAATTAACTACGTATAGCACTATAAACAGTTTATCATACTTTATAGCCACGGCTCTCGTCAACGGACGGTGGCGTCTTTGGAGAGGTCACAGAACTTGTGACAGAAATGTCTGTATGTTGTCCTTAAGATTTGGTTAATACGCAATTTGatgattcatttcttttctttttttggtgtaTGTGTATTTGAAGACTATGTGAAGGATGCGGGGCGCTCTTTATACCCAAATGCACACAGATACACACGAGTGTGTCGAATATCAAGCTGTGTGTGAGTTGAGGCGTGTGTAGcttcaaataattattgtagCCCGTAGCAGATTTCAAATTATACTTTCAAAtgtgaagacattttgaaaataagcaTCAAAAgtttgtacaatatatttttatacctgataatgctgttttattatacactttgtgcttgtttttaatttttaatttttttttttgctcttaaaacaaatgacaacaTGCTTTTATAATTGCTGCTTGGAGTAATGAATCGTGACTTTCTAAGTCTTTATTATTCAATATGTAACATATATTTACCAATGTGTaacttatttcaaatataaaatttgttcacaatt

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 2A1 isoform X2

GO: NA

KEGG:

id description
K14345 SLCO2A; solute carrier organic anion transporter family, member 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241313.1 False 2696 mRNA 0.46 14 12881334 12897897
XM_043241315.1 True 2727 mRNA 0.45 14 12885390 12897897

Neighbor

gene id symbol gene type direction distance location
ryk ryk,LOC107752642,LOC107696766,LOC107694116,LOC107753628 coding upstream 3549 12838229 ~ 12877785 (+)
sned1 sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186 coding upstream 45423 12806500 ~ 12835911 (+)
LOC122346411 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding upstream 115635 12760860 ~ 12765699 (+)
LOC122346842 LOC107752644,LOC107696763,LOC107593183,LOC107552264,LOC107753650,LOC107694115 coding upstream 120926 12740819 ~ 12760408 (+)
LOC122347050 tmem131,LOC107659030,LOC107692350 coding upstream 150251 12704645 ~ 12731083 (+)
rab6ba rab6ba,rab6b,LOC102207753,LOC100696791,LOC103151367 coding downstream 46398 12944295 ~ 12965465 (+)
cep63 cep63,LOC107590660,LOC107694114,LOC107552272 coding downstream 74194 12972091 ~ 12981529 (+)
amotl2a amotl2a,LOC107717938,LOC107694113,LOC107752638,LOC107590659,LOC107696770,LOC107552270 coding downstream 107094 13004991 ~ 13014401 (+)
sap130a sap130a,LOC107696772,LOC107590658,LOC107717942,LOC107552246 coding downstream 126650 13024547 ~ 13038280 (+)
LOC122346752 LOC107590657,LOC107694127,LOC107717944,LOC107696773,LOC107752637,LOC107552269 coding downstream 141626 13039523 ~ 13058121 (+)
G44622 NA non-coding upstream 181757 12664820 ~ 12699577 (+)
G44611 NA non-coding upstream 209669 12564092 ~ 12671665 (+)
G44606 LOC107593190,LOC107696746,LOC107552261,LOC107753661,LOC107694109,LOC107752664 non-coding upstream 387692 12492953 ~ 12493642 (+)
G44604 NA non-coding upstream 399152 12477124 ~ 12482182 (+)
G44575 hdlbp,LOC107733253,LOC107694132,LOC107552253,LOC107696756,LOC107752661 non-coding upstream 887197 11993558 ~ 11994137 (+)
G44615 NA non-coding downstream 185483 13083380 ~ 13084230 (+)
G44640 NA non-coding downstream 195959 13093856 ~ 13095910 (+)
LOC122346816 NA non-coding downstream 203382 13101279 ~ 13103566 (+)
G44872 NA non-coding downstream 415656 13313553 ~ 13313854 (+)
G44873 NA non-coding downstream 437292 13335189 ~ 13335542 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 75634 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 354377 12521773 ~ 12526957 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other upstream 721435 12154268 ~ 12159899 (+)
G44588 NA other upstream 788879 12087399 ~ 12092455 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other upstream 870795 12002147 ~ 12010539 (+)
smx5 lsm2,LSM2,smx5 other downstream 182668 13080565 ~ 13082119 (+)
G44645 NA other downstream 210838 13108735 ~ 13109366 (+)
G44887 NA other downstream 496332 13394229 ~ 13409912 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 1074276 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 2338268 15236165 ~ 15244280 (+)

Expression


Co-expression Network