G25642


Basic Information

Item Value
gene id G25642
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1937199 ~ 1944111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU28939
TCCATTATATATTTATACCGAACTAAATAGTCACAGAGAGAGAGATAGCGATAAGATACTGAGAGTATGACCAATAGGAGAATAACCAACGACAAAATGGACAGGGGTCCTCGTAAGACCGACTACAGCGAATCAGGAAGCTGAGTTTTGACAGACAGACGTTAACTGCACAGGCTTTAAAGTAGACCACTCACTGCTCTCCACTGGATCTGTTCATTACAGCACTCGAACAAACACATACGGGTAACTACATTTCACATTTTGCATATTTTTGTAATTAGCCTTTTTAATTCATCCACAAATCTTGAGGAGAGGGAAGGAGGGAAATATAGTATATTTATAAGACAGTAAAAGCTGGTCCCTCTGCTCAGTGGCTCATTAGCAGCGCGTCTCGTAGATTCCGCTGCGTCCAATGTATCGCACCCATTTAATCACATCATGGTCACTGTAGTTCAGTTTTGACTCGAACACCTTCAGATAACGCACCTTCAACCCCGAGGGTGCAAACGGAACCTCAAAGTTCATGGAAATGGGTGGACGGGCCCACTTCTTCTTATCATTAGTGGGCAGCAGCTCAATCTCAGCACTGATCTGAGACTCCTTCATTCCTGCCATGCGCTTGATCTTCCACACAATGGCGTTCTCACTGGCCTTGTATTTGGCTTTTCCTTTCATACAGATCACCTGCACTCCACTAGTGTTGAGAGGTGTTGGAATGCGCACCTCTATTTTCTGTGCCAGGAGTGAGGGCTTGAAATTAGATTTGATGACAACTTTGACCTCCAGCTTTGTGCGTCCAACCTCCCGGACCAGTGGAATGACCCGGAAGGGCAGAATTATGTCCTTAGTGGTGCGATACCTGCACACACAGATCGAGGATGTGTTAAGACAGAATCAAGACTCTGCAGTGTGAAGACAAACTGAAGCTGAACTAACCTCATGAGCTCATATTCCCCATCAGGAGGGATGAAGCTGATGCTGCGCTCAGAGTCGAACTTGCTGAGACGCACACACTGATGGAAAGTGCAGTCGTCGATGGCTATGGACTGCTTCCCACTGGTAGACAAACCAAGATGTTGAGTGTTTTATATAATAGAACATTAAGATATTTGACAAAAGCAGCAAATACTAGAGCAGGGGTGTCCAAACACAGTCCTGGAGGGCCATTGTCCAGCAGAGTTTAGCTCCAACTTACCTCAACACACTAGAAGTTTCTAGTATAACTAGTAAGATTTTGATTAGCTGGTTCAAGTGTGTTTAATTGGGGTTGGAGCTGAATTCTGCAGGACAGTCTGCAGGAGTGAGTTTAGACACCCCTGTACGAGAATAAAATGTACATACAATGAAATCATCACTGACAAAATATAATCAAAATTAAATCATATAAAACCACTTAATGCTAAAATGTTATACTTCGAAAAACTAGGGATGGACTAAAAGTTTTATTCATAATTTTAATTATGGACATTAACCGATACCATATTATCTACCAATATTTAACAATATTTATTCAAAAATTTGGGGTCAGTAAGATTTTATTTTTCCCGGAAAAATTAATAATTAAAATCAGCAGGGATGCATTCAGTTGCTCAGAAATGACAGTAAAGACATTTATAATGTTGCAAAAAAATGTCTATTTCAAATAAATACTTTTAAACTGTTCATCCTGGGAAAAAAAAAAAAAAAAAATCATGGTTTCATGGTAAAAAAAAGGCAGTTTTAACACTGATAATAATAAATGTTTTTAGAAGCAAATCATCATATTAGAATGATTTCTAAAGGATCATGTGACAGTGAAGAATGGAGTAATGATGCTAAAAATTCAGCTTTGCATCACAGGAATAAATTACATTTTAAAAAAATTCAAATAAAAATTTTAAATTGAAATCATATGCACAATATTACTGTTTTCACTGTGTTTTTGAATAAATAAATGCATCCTTGGTGCCTAGCATCAGAGATTCTTAAATCTCTGATGCTTACTTAGCAACTGCAAACTTTTGAATGGTAGTGTATTTTGCTTTGTCTTGTTTAAAAAAAAGTTTTAGAATGAAGTCTTCTATTTAGATACTTAAAGTAAAATCAGTCATCAAAACATCTATTAATGTTCTTCTCTAACCTGGTATAGAAAAAAAAAGTAGCTAGATGGAATTGAGAATAATAATAATAAATGTAACGATATTGGCCAATATATTAAGCATCCTTACTAAAAACCAAATAAAATAAATAAAAACAGTAATGAGACACTCATGTTCTGCAGATTAACAACACAACCAACATAAAACTGAACACAGAAATGTAAATATACAATACCTTCCCCCTAACTCACTGTGGGAGCACAGAGAAAAAGAGACGCAACAAAAACAGACAGCTTCAAAAATCAAAATAAACCACACACTTTACAATCAAACATGTTTTAAAAATTCTGGATTGAGAAACAAAATCCAGACAAAAGACAAACAAAATTTTCAAAGCAAACAAAGAGAGGAGACAGACAAGCAAAACAACTGCATGAACATGAAGCACTTTGAAACCTTTTCCCAGGATCATCAGTAGTTCCTCCTTTCCCCTGTTTGTCAATGACAATTTTGTCATTCATGCCAAACTTGCATTCAGGCATTCCACTCAGGTAGCTCTTCATCACCACACGACCGGAGACGTGAGCGCTCAGGACTTGACCTGTCAAGATGACACACAGTAGTGTGTGGATGGTTTGATAATAACTGAAGCACACAATCCTGAGACCTCAGTTAATGCTGTCTTACCTTGTGGAGACATGAGCAGGTTGACACTCTCCAGCACATCCAGGAAGAGCTCATTGCGGCGGTACTTGATGCCTTCACGACGCCAACCGATCTGACCAGTCACCTGGCTGGTGATCTGAGACTGCTCCTCCTTAGTCTGAGGCTGGCCTTTGATGCCCTGCTGGGTAATAAAAGTCTTCAGTGCTCCAGTCTCTGAGTTCTGTGGGTATCCAAAGTCCAGGATCTCTGCAAACACACA

Function

NR:

description
PREDICTED: Golgi resident protein GCP60 isoform X2

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU28939 True 3003 lncRNA 0.40 5 1937199 1944111

Neighbor

gene id symbol gene type direction distance location
CI01000004_01923895_01931254 ANXA13, ANXA13L coding downstream 5945 1923152 ~ 1931254 (-)
CI01000004_01876658_01882471 NA coding downstream 54728 1876658 ~ 1882471 (-)
CI01000004_01874467_01874928 TSEN15 coding downstream 61996 1874211 ~ 1875203 (-)
CI01000004_01864053_01864374 NA coding downstream 72825 1863892 ~ 1864374 (-)
CI01000004_01859136_01861721 SEC22BB, SEC22B, SEC22BA, SEC22B.L, S22BB coding downstream 73511 1859131 ~ 1863688 (-)
CI01000004_01946043_01954044 PCYT1A, PCYT1AA coding upstream 1673 1945784 ~ 1956769 (-)
CI01000004_01987895_01997457 NA coding upstream 42477 1986588 ~ 1997457 (-)
CI01000004_02019772_02021213 NA coding upstream 75528 2019639 ~ 2021213 (-)
CI01000004_02027672_02032165 PFN2, PFN2L coding upstream 83314 2027425 ~ 2032165 (-)
CI01000004_02066165_02067630 NA coding upstream 122054 2066165 ~ 2067898 (-)
G25744 NA non-coding downstream 26676 1910290 ~ 1910523 (-)
G25666 NA non-coding downstream 29658 1905313 ~ 1907541 (-)
G25661 NA non-coding downstream 179878 1755538 ~ 1757321 (-)
G25712 NA non-coding downstream 183739 1753239 ~ 1753460 (-)
G25700 NA non-coding downstream 206576 1728532 ~ 1730623 (-)
G25640 NA non-coding upstream 72146 2016257 ~ 2018609 (-)
G25676 NA non-coding upstream 129622 2073733 ~ 2074026 (-)
G25657 NA non-coding upstream 171343 2115454 ~ 2123244 (-)
CI01000004_02137991_02139934 NA non-coding upstream 195273 2137366 ~ 2140890 (-)
G25660 NA non-coding upstream 250296 2194407 ~ 2195234 (-)
CI01000004_01773383_01774888 INSL5B other downstream 162258 1772928 ~ 1774942 (-)
G26788 NA other upstream 1330322 3267683 ~ 3275721 (-)
G27746 NA other upstream 3234116 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 3676272 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 4590716 6538904 ~ 6541252 (-)
G29388 NA other upstream 4687182 6631293 ~ 6631907 (-)

Expression


Co-expression Network