sft2d2a (zgc:110788,LOC107711028,LOC107726515,LOC107673477,LOC107585211,LOC108440097,LOC107580362)


Basic Information

Item Value
gene id sft2d2a
gene name zgc:110788,LOC107711028,LOC107726515,LOC107673477,LOC107585211,LOC108440097,LOC107580362
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 17792318 ~ 17794634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241336.1
AGTAGATGGCGGCCTGAGCACCAGGTGTTGTGTTCAATGAAGGGAACCGAAAGGTGAAGGGAACACCACTGGTGTCAAGTGAGTTTCAGCTGGACGATGAAACGACGCGTTCTCAAGGATTTAGACTGAAGAGATACAATTAATACGGAGAACTGTATGTAGAGTGATGGACAAACTCCGAGCGGTTCTGAGTGGTCGTGATGGAAACAGTGACAACAGAAATATCTTACAGGCGGCGAACGAGGCGTCCACGCTTGGATGGGGAACGCGTGTGAAAGGTTTCCTCGTCTGTATGGTCATCGGAGTGGTGTTCACTATCCTGggaGTATGTTGCCTGTTTATTCCTAAAATAGGGGTGATTCTCTTCATTGTGTTTTACACATTTGGCAACATATGTTCATTAGTAAGCACCATGTTTCTGATGGGTCCAGTGAAACAGCTGAAGCGGATGTGTGACAAAACCAGAGCCTTCGCTACTGTTGTTATGCTAACATGTCTGGTTCTCACACTCTGTGCAGCATTTTGGTGGAAGATCTTTGCACTCACTTTGCTGTTTGTCATTCTGCAAGTGTTTGCATTTGCCTGgTATAGCTTGTCATACATTCCTTTCGCAAGAGATGCCATCCTGAAGTTTTTCTCCATGCTGTGCACCATGTGTGTGAAATGAACCCCACCAACTTTCTGCTGAAGCATTTGGTGAATTTTAGGAAATGATCATTGACAGAATGGCGCAATAggacattttgttaaatgtgaacaTAAAAAAGGCTGCATTCcactgaatgtgttttattttaaatgttgtttacagaaaaggttattaaacagaccagcattaaaattgatatttataaaatgaaacattttgggGATGGTTTTTGAAAGTTGGACTTTCAGATTTCTCTACCTTTTGTCTTAATATTGTATGTTAAAACCCTGTAAATAAAGACTAGTTTTATCAGCTCA

Function

NR:

description
vesicle transport protein SFT2B-like

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241336.1 True 966 mRNA 0.41 8 17792318 17794634

Neighbor

gene id symbol gene type direction distance location
tmem45a tmem45a,LOC107673617,LOC107585212,LOC107582844,LOC107711111,LOC107685333,LOC107722675 coding upstream 472 17786499 ~ 17791846 (+)
lnp1 LOC107585171,LOC107673618,LOC107711110,LOC107582738,LOC107685315,LOC107722679 coding upstream 6153 17779162 ~ 17786165 (+)
LOC122346707 LOC107582740,LOC107685313,LOC107722678 coding upstream 275089 17514420 ~ 17517229 (+)
lrrc15 lrrc15,LOC107711115,LOC107585214 coding upstream 276387 17508356 ~ 17515931 (+)
rhcgl1 rhcgl1,LOC107722672,LOC107582811,LOC107685316,LOC107711010,LOC107667994,LOC107585195 coding upstream 302688 17485404 ~ 17489630 (+)
chd1l chd1l,LOC107711109,LOC107726512,LOC107585192 coding downstream 362 17794996 ~ 17809179 (+)
traf3ip2l LOC107585170,LOC107673545,LOC107711107,LOC107726519,LOC107582737 coding downstream 14627 17809261 ~ 17818232 (+)
negr1 LOC107673552,LOC107582736,LOC107685309,LOC107726517,LOC107585169,LOC107711106 coding downstream 45409 17840043 ~ 17934803 (+)
zranb2 zranb2,LOC107685308,LOC107726518 coding downstream 182164 17976798 ~ 17983627 (+)
ptger3 LOC107711104,LOC107585167,LOC107726516,LOC107685339,LOC107582843 coding downstream 189138 17983772 ~ 17992285 (+)
G45962 LOC107585173,LOC107582739,LOC107711112 non-coding upstream 19585 17772154 ~ 17772733 (+)
G45922 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 non-coding upstream 123311 17553517 ~ 17669007 (+)
G45903 NA non-coding upstream 552340 17237590 ~ 17239978 (+)
G45896 NA non-coding upstream 604514 17187418 ~ 17187804 (+)
LOC122346379 NA non-coding upstream 830627 16838389 ~ 16961691 (+)
G46020 NA non-coding downstream 150092 17944726 ~ 17995069 (+)
G46024 NA non-coding downstream 220606 18015240 ~ 18018835 (+)
G46018 NA non-coding downstream 233140 18027774 ~ 18046687 (+)
G46032 NA non-coding downstream 235363 18029997 ~ 18059288 (+)
G46028 NA non-coding downstream 245159 18039793 ~ 18060993 (+)
G45894 NA other upstream 605010 17186708 ~ 17187308 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 2225650 15564981 ~ 15566668 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 2332932 15358861 ~ 15459386 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 2548038 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 3812032 13972173 ~ 13980286 (+)
G46022 NA other downstream 200557 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 362021 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 782544 18577178 ~ 18616958 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 1467950 19262584 ~ 19347629 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 1771377 19566011 ~ 19594008 (+)

Expression


Co-expression Network