nipa2 (nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725)


Basic Information

Item Value
gene id nipa2
gene name nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18198983 ~ 18205234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241345.1
cacacacacacacacactcaatcattcttcattcttcctttgagcagtgtgtgtgtgtgtgctgtcatgAATGTTACCTCAGATTTTATGAACTGCAGCTTGTGTGGTGTATCTTATAAAAATGGTTTTGCGGTAGGCCAGGATTGCTCCTCTGGACTGAATCTTTGGTGTGTGTATGTCAATGTGACGAGAGGAAACTCTACCAACAACACTATGGGTCTAGACAGAGGAAAGTACGATTTCTATATAGGCCTCGCTTTGGCTATAAGCTCCAGTATATTTATTGGAGGTAGTTTCATCTTAAAGAAGAAAGGACTCCTTCGACTGGCCAGGAAGGGCTCTATGCGGGCAGGCCAAGGAGGTCACGCATACTTAAAAGAATGGCTTTGGTGGGCTGGCTTGCTGTCAATGGGGGCCGGCGAAGCTGCCAATTTCGCCGCGTACGCCTTTGCTCCCGCCACCCTCGTCACTCCTCTCGGGGCTCTCAGCGTGCTAGTCAGTGCGGTACTGTCCTCGTACTTCCTGACAGAGAGGTTGAATCTGCACGGGAAGCTTGGCTGTCTGCTCAGTATCCTGGGCTCCACTACCATGGTGATACATGCCCCTCAAGAGGAGGAGATGGACAGTCTAGAAGACATGGCCAAAAAACTGGTTGATCCAGGCTTCGTGGTCTTCGCGACAGCTGTCATCATCACTGCGCTCATTTTCATCTTCGTATTGGGCCCACGCCACGGGCAAACCAACATCCTGGTCTACATCACCATCTGCTCCGTGATCGGTGCTCTGTCCGTCTCCTGCGTGAAGGGATTGGGCATCACCATTAAGGAGGCCATCGCCGGAAAGCCAGTGTTGCGAAACCCTTTGGcctggctgctgctgctgagccTGATCGCTTGCGTTAGCACACAGATCAACTACCTGAACAAAGCACTGGACATCTTCAACACATCCCTGGTGACGCCCATCTATTACGTCTTCTTCACCACCTCCGTGCTCTCCTGCTCTGCCATATTGTTCAAAGAATGGGAACACATGGGCACCGATGACATCATCGGCACACTGAGCGGCTTTGTTACGATTATCGTGGGCATCTTCCTGCTGCACGCCTTTAAGGACGTTAGCATTAGCTTGGCGACATTGGCTGTGTCCATCAGGAAGGACGAGAGGAACGGCCCTGTATTAAACGGCATGGCAGCTCACAACCACTCCAATTATGAGCTGCTACGTAACGATGTCACAGAGGACTTCGACGACAGAGAGTCAGGGTTGCCTTTCGACAGCGTCTCCAGAAGAAACGGCACTATGACCGTCTCTTAGGTTCAAAGAGGAACCGGTATGCAGCAGTTCgtctatgaaaatgttttggctGCTCTATGGACATTTAgcctttttctttccttttcagaTATGAGATAAAAACCTAAGACAATCAACTCtcaatacaaaaacataaatacgaAAAGATGGACCAATCGATTGTACTAAGGGTTTTGtttggcttatttttttttatttttttgttcatttcaaacTAGACTACATGGTAAGCTTCATCTCATTCCTCCATGTAGCACTGTAAATATACAACTGTACGTTTTTCAGAgacttttgttatattttatgtacagatttatgtatttacatgcactGAGTTTCTTTCTACAAAATCGGTAGTTGCTTTGACTTTGTAATAAAGACATCCAAGTGGAATGACGAGAAGAACTTCTCAGTTCA
>XM_043241346.1
TTACGAATCGGACGTCTCTGTAGTGTAGGTGGATCTACATGGGGTCGCGTCAACATCGCGTCTGAATTCCGTGGTCGAGAGAAAATGTGAAAGTCAAAACCGTGAAATCTCAGTGACCGGACACGATGTCGAGCTGATCACAGGAAAGCAGTTAGGTTTTGCGGTAGGCCAGGATTGCTCCTCTGGACTGAATCTTTGGTGTGTGTATGTCAATGTGACGAGAGGAAACTCTACCAACAACACTATGGGTCTAGACAGAGGAAAGTACGATTTCTATATAGGCCTCGCTTTGGCTATAAGCTCCAGTATATTTATTGGAGGTAGTTTCATCTTAAAGAAGAAAGGACTCCTTCGACTGGCCAGGAAGGGCTCTATGCGGGCAGGCCAAGGAGGTCACGCATACTTAAAAGAATGGCTTTGGTGGGCTGGCTTGCTGTCAATGGGGGCCGGCGAAGCTGCCAATTTCGCCGCGTACGCCTTTGCTCCCGCCACCCTCGTCACTCCTCTCGGGGCTCTCAGCGTGCTAGTCAGTGCGGTACTGTCCTCGTACTTCCTGACAGAGAGGTTGAATCTGCACGGGAAGCTTGGCTGTCTGCTCAGTATCCTGGGCTCCACTACCATGGTGATACATGCCCCTCAAGAGGAGGAGATGGACAGTCTAGAAGACATGGCCAAAAAACTGGTTGATCCAGGCTTCGTGGTCTTCGCGACAGCTGTCATCATCACTGCGCTCATTTTCATCTTCGTATTGGGCCCACGCCACGGGCAAACCAACATCCTGGTCTACATCACCATCTGCTCCGTGATCGGTGCTCTGTCCGTCTCCTGCGTGAAGGGATTGGGCATCACCATTAAGGAGGCCATCGCCGGAAAGCCAGTGTTGCGAAACCCTTTGGcctggctgctgctgctgagccTGATCGCTTGCGTTAGCACACAGATCAACTACCTGAACAAAGCACTGGACATCTTCAACACATCCCTGGTGACGCCCATCTATTACGTCTTCTTCACCACCTCCGTGCTCTCCTGCTCTGCCATATTGTTCAAAGAATGGGAACACATGGGCACCGATGACATCATCGGCACACTGAGCGGCTTTGTTACGATTATCGTGGGCATCTTCCTGCTGCACGCCTTTAAGGACGTTAGCATTAGCTTGGCGACATTGGCTGTGTCCATCAGGAAGGACGAGAGGAACGGCCCTGTATTAAACGGCATGGCAGCTCACAACCACTCCAATTATGAGCTGCTACGTAACGATGTCACAGAGGACTTCGACGACAGAGAGTCAGGGTTGCCTTTCGACAGCGTCTCCAGAAGAAACGGCACTATGACCGTCTCTTAGGTTCAAAGAGGAACCGGTATGCAGCAGTTCgtctatgaaaatgttttggctGCTCTATGGACATTTAgcctttttctttccttttcagaTATGAGATAAAAACCTAAGACAATCAACTCtcaatacaaaaacataaatacgaAAAGATGGACCAATCGATTGTACTAAGGGTTTTGtttggcttatttttttttatttttttgttcatttcaaacTAGACTACATGGTAAGCTTCATCTCATTCCTCCATGTAGCACTGTAAATATACAACTGTACGTTTTTCAGAgacttttgttatattttatgtacagatttatgtatttacatgcactGAGTTTCTTTCTACAAAATCGGTAGTTGCTTTGACTTTGTAATAAAGACATCCAAGTGGAATGACGAGAAGAACTTCTCAGTTCA
>XM_043241348.1
GAACCGAATAATTTTAATACCGTAGTTTTGCGGTAGGCCAGGATTGCTCCTCTGGACTGAATCTTTGGTGTGTGTATGTCAATGTGACGAGAGGAAACTCTACCAACAACACTATGGGTCTAGACAGAGGAAAGTACGATTTCTATATAGGCCTCGCTTTGGCTATAAGCTCCAGTATATTTATTGGAGGTAGTTTCATCTTAAAGAAGAAAGGACTCCTTCGACTGGCCAGGAAGGGCTCTATGCGGGCAGGCCAAGGAGGTCACGCATACTTAAAAGAATGGCTTTGGTGGGCTGGCTTGCTGTCAATGGGGGCCGGCGAAGCTGCCAATTTCGCCGCGTACGCCTTTGCTCCCGCCACCCTCGTCACTCCTCTCGGGGCTCTCAGCGTGCTAGTCAGTGCGGTACTGTCCTCGTACTTCCTGACAGAGAGGTTGAATCTGCACGGGAAGCTTGGCTGTCTGCTCAGTATCCTGGGCTCCACTACCATGGTGATACATGCCCCTCAAGAGGAGGAGATGGACAGTCTAGAAGACATGGCCAAAAAACTGGTTGATCCAGGCTTCGTGGTCTTCGCGACAGCTGTCATCATCACTGCGCTCATTTTCATCTTCGTATTGGGCCCACGCCACGGGCAAACCAACATCCTGGTCTACATCACCATCTGCTCCGTGATCGGTGCTCTGTCCGTCTCCTGCGTGAAGGGATTGGGCATCACCATTAAGGAGGCCATCGCCGGAAAGCCAGTGTTGCGAAACCCTTTGGcctggctgctgctgctgagccTGATCGCTTGCGTTAGCACACAGATCAACTACCTGAACAAAGCACTGGACATCTTCAACACATCCCTGGTGACGCCCATCTATTACGTCTTCTTCACCACCTCCGTGCTCTCCTGCTCTGCCATATTGTTCAAAGAATGGGAACACATGGGCACCGATGACATCATCGGCACACTGAGCGGCTTTGTTACGATTATCGTGGGCATCTTCCTGCTGCACGCCTTTAAGGACGTTAGCATTAGCTTGGCGACATTGGCTGTGTCCATCAGGAAGGACGAGAGGAACGGCCCTGTATTAAACGGCATGGCAGCTCACAACCACTCCAATTATGAGCTGCTACGTAACGATGTCACAGAGGACTTCGACGACAGAGAGTCAGGGTTGCCTTTCGACAGCGTCTCCAGAAGAAACGGCACTATGACCGTCTCTTAGGTTCAAAGAGGAACCGGTATGCAGCAGTTCgtctatgaaaatgttttggctGCTCTATGGACATTTAgcctttttctttccttttcagaTATGAGATAAAAACCTAAGACAATCAACTCtcaatacaaaaacataaatacgaAAAGATGGACCAATCGATTGTACTAAGGGTTTTGtttggcttatttttttttatttttttgttcatttcaaacTAGACTACATGGTAAGCTTCATCTCATTCCTCCATGTAGCACTGTAAATATACAACTGTACGTTTTTCAGAgacttttgttatattttatgtacagatttatgtatttacatgcactGAGTTTCTTTCTACAAAATCGGTAGTTGCTTTGACTTTGTAATAAAGACATCCAAGTGGAATGACGAGAAGAACTTCTCAGTTCA

Function

symbol description
nipa2 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism. Orthologous to human NIPA2 (NIPA magnesium transporter 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0015693 magnesium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG:

id description
K22733 NIPA, SLC57A2S; magnesium transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241345.1 False 1734 mRNA 0.47 6 18198983 18203575
XM_043241346.1 True 1765 mRNA 0.48 6 18198983 18204345
XM_043241348.1 False 1634 mRNA 0.47 6 18198983 18205234

Neighbor

gene id symbol gene type direction distance location
LOC122346611 fndc9,LOC107673533,LOC107585156,LOC107711090,LOC107716964,LOC107580334,LOC107685295 coding downstream 7460 18187428 ~ 18191523 (-)
chst7 chst7,LOC107711096,LOC107673531,LOC107585159,LOC107685297,LOC107753406 coding downstream 43018 18154549 ~ 18155965 (-)
rp2 rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570 coding downstream 82606 18110646 ~ 18116377 (-)
jade3 LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568 coding downstream 89868 18099864 ~ 18109115 (-)
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding downstream 102448 18091115 ~ 18096535 (-)
nipa1 nipa1,LOC107716965 coding upstream 417 18205651 ~ 18207634 (-)
LOC122346396 gabrg3 coding upstream 158604 18363838 ~ 18455787 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding upstream 252893 18458127 ~ 18488874 (-)
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding upstream 497620 18702854 ~ 18705732 (-)
LOC122346645 LOC106676354,LOC106674584,LOC106676400 coding upstream 537831 18743065 ~ 18744116 (-)
G46092 NA non-coding downstream 81401 18117356 ~ 18117582 (-)
G46074 NA non-coding downstream 101493 18097068 ~ 18097490 (-)
LOC122346732 nit2 non-coding downstream 132034 18062781 ~ 18066949 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding downstream 154353 18040364 ~ 18044630 (-)
G46000 NA non-coding downstream 376248 17822536 ~ 17822735 (-)
G46140 NA non-coding upstream 44700 18249934 ~ 18250635 (-)
G46160 NA non-coding upstream 127609 18332843 ~ 18333266 (-)
G46172 NA non-coding upstream 154445 18359679 ~ 18359981 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding upstream 398757 18603991 ~ 18686824 (-)
LOC122346470 NA non-coding upstream 437488 18642722 ~ 18643353 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 424876 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 784844 17382327 ~ 17414139 (-)
G45910 NA other downstream 890505 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 952597 17235790 ~ 17246386 (-)
G45895 NA other downstream 1011665 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 439072 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 501389 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 508940 18714174 ~ 18717488 (-)
G46478 NA other upstream 849912 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 909827 19115061 ~ 19149731 (-)

Expression


Co-expression Network