LOC122346611 (fndc9,LOC107673533,LOC107585156,LOC107711090,LOC107716964,LOC107580334,LOC107685295)


Basic Information

Item Value
gene id LOC122346611
gene name fndc9,LOC107673533,LOC107585156,LOC107711090,LOC107716964,LOC107580334,LOC107685295
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18187428 ~ 18191523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241349.1
aaaaaaaaagagagcaagtTAGTGCTTGgagaaaaactacaaaagttATGTTGGGGCTGTCTTATTGTAAGCCAAGTTAGCcaacaacaatatttaatatactttgtaaaattgttttattcctgtaatgcagagctgaattttcattagcCATTTCTCCCATCTTCAGTTCTAATTTATTATCAATATGctgataataaaagaaaaaaaaattcaaaaacctACTgacccaaacattttaaatgtagtgtaaattgttacaaaatatttatattttaaataaatgcatttctttttgcactttttattaCAAGAACCCTaaatatcagtaaaaaaaaataaatgaataatcagTGGGATTTTttccaacactgataataaatcagcatattagattaATTTCTGAGAGAGCTTTTCaaggacactgaagactgaaggtATGGATTACAAATTCAGCTTGGCATTACAGGAGTAAATAGTATTAAGTATATTTGTATAGAAACCCcttatttattctaataataattctacttatatttcacaatattatagttttactgtattgtatcaaataaatgcaacatttatgaGCATAAAGAAAATTTTAATGATCCCACACGTTTGAATTGTATGCATgcgtatatgtatgtaaattgtACGTGTAtgcgtgtacacacacacacaacaaaaaacaaaaattaaacgatgtgcaaaaaaaagttttaaatactgTAGGAACAAAAATTGAATGAAACAagcttctttcttctctcttaATAAGAACACAGTACTTGACAGATTAAAGATTAATCATTCATGAGCATACTTGTCCGTAGGTGTTGTGGCAGTGAGTCAGGGGAGACAGGTCACCAGTATGAGGGAGTAATTGAGAGCAAAGAGGGGGAGGAAAAGTGCCATGTGTTTTTCCAGTGATTGAGAGAGCAAGGATGTGTAAGAGATCGAGAATGAATGAGAGTCCAAGCTCTCCAAGCTgtaattctgtttaaaatgcattctacGCAAAACACTGATGTGTCGTCTCCCCCTCCCCgatgcactctctctctctccctctctctgcttTATTTGCCGTCTGCTGTTCTAATCAGATAGAAGAGCTTTTCTGTGCAGTGGTGTGGAAGTGGAGCTCTTTCTGCAGGAGACCCGAGCCATGCCAAACACAGACAGCTACAGGTCACACTCTCTGAACGCTTCAGGGGGATTCTGTCTGCAAATAAGAGACGCTCTGTGCACGAAGTGACTCTTCTCATCTTTTacgATCCTTTAAAAGCACTGCATTTCATCTCAAACCAGCCTATGTCAAACTGTGCATGCATGAGGGCCTgtgtttcaacttaaaaaaaaaaacaaaaaacaaactcaacATGACTATCACCATTCAGAATATCACAGCCACCTCTGCCATCGTGAGCTGGCCGTCATCTCCAGGCTGCGTGGACACGTTCTACAGCGTCATGTATCACCCCAACTGGAACAGCCTGTTAATGGGTTATACTCGCAAGAGCTTCCTGCGGGAGGACAGGGTCCCCGTGAGCCAGACGTCCACGAGTCTGGGCAGCCTCAGTCCACAGACCACTTACATCCTCTGCGTCACCTGCCAGTCTGCCAACCCCACCAGAGAGCAGTGCCAGGTCTTCAGTACCTTAGATGAGGGCACTGAGCTGGGAGAGAGCGGCAGGGAGCTGGCGATGGGCGTCTGGCTGGCCAGCAGCATCCTTTTGCTGATCATTGCTGTGGCTCTGCTTTGGGGATGTCTGCACACCATGTGTCCAGCAAAGAGGGACCCAGAAAGAGGCAGCCAGTCAGGTCCTAACCCTCCACACCTGGCCCTGACCCCCATGGGTGGCAACATGGGAAGCGAAGGAAGAAAAAGTCTGTACACACTCAGCTGCAGCGGGGAAGACTCTCAGAACGCAACGGTGATTGAGAATCCTTTTCGAGCCGAGCACGGCAGGGAAATGGTGAACGGGCAGGGTCTTGAACTTCGAACACCAAGTAATAAACAGAGATTTGGCCCTGGGTCAGAATAACTAGGGCACcaaattgttattttgatgCGCTGACCCCAAAAATTCAATGAGGACAAACGCCGGGGTTGAAATCATTTTGAGGAAAGGAGATCGACAGTCGAACCAGGATGACAGGgttaaattagcatttaaatgtatgatgttaatatcacaaatatattaaaactgaagGAAACTGGAGGAGGTGGCTTGGCTTTAAACTTTTACAAACTGCAGTTTTTTTGTGGTATGCCTTTACAGTGGTTCAATTTTTAACGTGAGTTCATGTATTTGGAATGAGAATTAATCTAGGTTTATGCTTTTGTTCCATTTATTTACTActcatttacaataatttataaataataatcataactaAAATAAtcgtttaaaaatttaattttatttagtaagaaataaaacattcacatcaaaacaaaatattcacaTCAGCATaacttattttagatatttCCACATAATTCGGCTCACCTATCAGCTTACAATGTTGGAATTGTGTCTGTAGAGTACAGTATcagtttaaagttaaacacCACTGACATATTGGTTTTGCAAGGCATAAAACatccaaccaaaaaaaaaaataaaaatcttgtgCAAACAACTGCTTTGTGCAACGTTACCTTTAATGGCTGTAGAAGTGATTTTAATCTCTTTGTGAGTTGATAGTCTATCAGTTTTGTGTTAGTTGCACTTAAATCCTACTATGCTTGAAATGTACTTTGCTACCTATCCatcttgcttaataaaaaaaaaaaaaaaaaaaaa

Function

symbol description
fndc9 Predicted to be integral component of membrane.

NR:

description
PREDICTED: fibronectin type III domain-containing protein 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241349.1 True 2819 mRNA 0.39 2 18187428 18191523

Neighbor

gene id symbol gene type direction distance location
chst7 chst7,LOC107711096,LOC107673531,LOC107585159,LOC107685297,LOC107753406 coding downstream 31463 18154549 ~ 18155965 (-)
rp2 rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570 coding downstream 71051 18110646 ~ 18116377 (-)
jade3 LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568 coding downstream 78313 18099864 ~ 18109115 (-)
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding downstream 90893 18091115 ~ 18096535 (-)
si:dkey-66a8.7 LOC107673611,LOC107711100,LOC107685304,LOC107582732,LOC107585166 coding downstream 96897 18088060 ~ 18090531 (-)
nipa2 nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725 coding upstream 7460 18198983 ~ 18205234 (-)
nipa1 nipa1,LOC107716965 coding upstream 14128 18205651 ~ 18207634 (-)
LOC122346396 gabrg3 coding upstream 172315 18363838 ~ 18455787 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding upstream 266604 18458127 ~ 18488874 (-)
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding upstream 511331 18702854 ~ 18705732 (-)
G46092 NA non-coding downstream 69846 18117356 ~ 18117582 (-)
G46074 NA non-coding downstream 89938 18097068 ~ 18097490 (-)
LOC122346732 nit2 non-coding downstream 120479 18062781 ~ 18066949 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding downstream 142798 18040364 ~ 18044630 (-)
G46000 NA non-coding downstream 364693 17822536 ~ 17822735 (-)
G46140 NA non-coding upstream 58411 18249934 ~ 18250635 (-)
G46160 NA non-coding upstream 141320 18332843 ~ 18333266 (-)
G46172 NA non-coding upstream 168156 18359679 ~ 18359981 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding upstream 412468 18603991 ~ 18686824 (-)
LOC122346470 NA non-coding upstream 451199 18642722 ~ 18643353 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 413321 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 773289 17382327 ~ 17414139 (-)
G45910 NA other downstream 878950 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 941042 17235790 ~ 17246386 (-)
G45895 NA other downstream 1000110 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 452783 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 515100 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 522651 18714174 ~ 18717488 (-)
G46478 NA other upstream 863623 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 923538 19115061 ~ 19149731 (-)

Expression


Co-expression Network