agxta (agxta,agxt,LOC107696749,LOC107552266,LOC108427662)


Basic Information

Item Value
gene id agxta
gene name agxta,agxt,LOC107696749,LOC107552266,LOC108427662
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12084281 ~ 12087593 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241354.1
TAACCATTGCCTCAGTCTGTCAGTGTCGCAGCAGCATTATGTCCTCTCTGTCTGTTCTTCCACCGGAATGCCTGTTACAGCCTTTCCCCGTCCCCCAGCGTCTTATGCTAGGACCGGGACCGTCCAATGTTCCCTCACGGATCGCAGCAGCTGGAGCCCAGCCCATGCTAGGCCACCTGCATGCAGAAACCATTGAGATTATGAATCAGATCAAAAGTGGCATTCAGTATGCATTTCAGACCCGAAACCGAGTGACTCTGGCTGTGAGTGGACCAGGTCATGCAGCTATGGAGTGTGCCATCTTTAACTCCCTGGAGCCCGGAGAGAGCGCCCTCATAGCCGTCAGTGGCATATGGGGAGAGAGGGCTGCAGAGATAGCTGAGAGAATAGGTGCCAAGGTGAACACAGTTCACACCTCTGCTGGTGGGTACTTCACAAATGAGGAAATTGATCAGGCATTAGATAAATACAGGCCAGTGGTGTTTTTTCTCACACATGGAGAATCCTCCACAGGAGTCGTCCATCCCATAGACGGCATAGGTGACCTTTGCCACAAGTACGACTGCTTGTTTCTGGTGGATTCAGTAGCAGCATTGGGAGGTACTCCTATCTGCATGGATGAGCAAGGTATTGACATCATGTATACTGGCTCTCAGAAGGTTTTGAACGCACCTCCAGGAACTGCACCAATCTCCTTTAGTGAGAGAGCATGcCAGAAAATATTTAACAGGAGAACAAAACCAATCTCTTACTTCTTGGACATGAGCTGGTTGGCAAATTACTGGGGTTGTGATGACAAGCCTGTGCGCACTTATCACCACACTGGACCAGTATCTTCTTTCTATGGTCTGCGTGAGAGTCTGGCCATCCTCGCGGAGACTGGTCTTGAAAACTCGTGGAAACGGCACAAAGAGGTCGCAGAGTACTTCCACAAAGGCTTAGAAGAAATGGGCTTAAAGCTGTTTGTGCAGGATAAGAAAGCAAGACTACCAACAGTGACCACAATAGTAGCTCCCCCAGGATATGACTGGCGGGAAATCACAGGGTATATCATGAAGACCTACAACATTGAAATCTCTGGGGGTCTTGGACCATCTGCTGGCATGGTTTTGCGCGTGGGATTGATGGGATGTAACAGCAGCAAGGCCAATGTGGACAAGGTGTTGGAAGCCTTGGCTGATGCTCTGAAACACTGTCACAAAAGCAGAGTCTGATGGCATGACCCgtcatcaa

Function

symbol description
agxta Predicted to enable alanine-glyoxylate transaminase activity and serine-pyruvate transaminase activity. Predicted to be involved in glycine biosynthetic process, by transamination of glyoxylate. Predicted to be active in peroxisome. Is expressed in liver and pronephric duct. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 1. Orthologous to human AGXT (alanine--glyoxylate and serine--pyruvate aminotransferase).
agxt Enables several functions, including alanine-glyoxylate transaminase activity; protein homodimerization activity; and pyridoxal phosphate binding activity. Involved in carboxylic acid metabolic process. Located in peroxisomal matrix. Implicated in primary hyperoxaluria type 1.

NR:

description
serine--pyruvate aminotransferase, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241354.1 True 1233 mRNA 0.50 11 12084281 12087593

Neighbor

gene id symbol gene type direction distance location
dtymk dtymk,LOC107593168,LOC107694123,LOC107696762,LOC107552279 coding downstream 741 12081977 ~ 12083540 (-)
stk25a LOC107733254,LOC107593165,LOC107694119,LOC107696758 coding downstream 21863 12055892 ~ 12062418 (-)
hdlbpa hdlbp,hdlbpa,LOC107694132,LOC107696756 coding downstream 85786 11973465 ~ 11998495 (-)
trnap-ugg_4 NA coding downstream 111501 11972709 ~ 11972780 (-)
trnag-ucc_1 NA coding downstream 111730 11972480 ~ 11972551 (-)
zgc:103559 zgc:103559,LOC107752646,LOC107696750,LOC107552265,LOC107733245,LOC108427664 coding upstream 631 12088224 ~ 12094740 (-)
LOC122346505 sox14,LOC107679857,LOC107756185,LOC107713406,LOC107694108,LOC103365676 coding upstream 175326 12262919 ~ 12264713 (-)
im:7152348 LOC107717945,LOC107694124,LOC107590683,LOC107752641,LOC107696753,LOC107552260 coding upstream 879507 12967100 ~ 12970628 (-)
trnap-ugg_5 NA coding upstream 883490 12971083 ~ 12971154 (-)
trnap-cgg_1 NA coding upstream 883885 12971478 ~ 12971549 (-)
G44501 NA non-coding downstream 655518 11428125 ~ 11428763 (-)
G44460 NA non-coding downstream 841775 11242277 ~ 11242506 (-)
G44459 NA non-coding downstream 842249 11241637 ~ 11242032 (-)
G44457 NA non-coding downstream 844817 11239119 ~ 11239464 (-)
G44452 NA non-coding downstream 846083 11237962 ~ 11238198 (-)
G44705 NA non-coding upstream 62241 12149834 ~ 12437749 (-)
G44730 LOC107552274,LOC107593170,LOC107694117,LOC107696767,LOC107753639 non-coding upstream 436363 12523956 ~ 12525300 (-)
G44737 NA non-coding upstream 508253 12595846 ~ 12965513 (-)
LOC122347051 tmem131,LOC107659030,LOC107692350,LOC107732007,LOC107548642 non-coding upstream 640538 12728131 ~ 12730973 (-)
G44773 NA non-coding upstream 803123 12890716 ~ 12891336 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 1014815 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 1099149 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 1248756 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other downstream 1367540 10710045 ~ 10716741 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 1575278 10434204 ~ 10509003 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 438163 12525756 ~ 12897718 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 1567667 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 1630609 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 2072882 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 3239990 15327583 ~ 15330851 (-)

Expression


Co-expression Network