mlpha (mlpha,mlph,LOC107748571,LOC107586370,LOC107688909,LOC107596317,LOC107677617)


Basic Information

Item Value
gene id mlpha
gene name mlpha,mlph,LOC107748571,LOC107586370,LOC107688909,LOC107596317,LOC107677617
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7010883 ~ 7019915 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241363.1
CTCTGCcacaacatttcatttgaaaaaccAGACATGTGATTACGATTGCCATACCTCTGACTATCCTCCCATTATCTGCCTCATCCCGAGAGACTTGGCAAGAGCAGCTACTTGTCTGCAAGCAAGatcaactAAGCTCCGAACATGGACACGAAGTTGGACCTGTCCAGGCTAACAGAAGAGGAGGCCAAACATGTGTGGGAAGTCATTCAGAGAGACTTCGTCCTTAGGAAAAAGGAAGAGGAGAGGCTTGGGGAGCTTAAATCCAAGATTGATAAGGAAGAATCAAAGAGGGAGCTCCTGGGATCTCAGTCCAACCTGGCGGACTCTCACTGCATCCGCTGTCTGCAGCCCTTTAAGTTCCTGGTGAACAGCAAGCGGCAGTGTATCGACTGTAAACTTTTCACCTGCAAGACCTGCAGCCGCTACAACAAAAAGGAGCGCGGCTGGGTATGCGACCCCTGCCGCATGTCCAGggTCCTGAAAATCGGAACCTTGGGGTGGTACCATGACAACGTCCGCTCTCGCTTCAAGCGCTTTGGCAGCGCGAAAGTGATGAGGTCACTGTACAAGAGATTAAACGAAGAGGGTCACCGTGATGATGACACACAGAGCATGCCTGATGTGCGCAATGCGTATAACGGGCATGAAGATGAACATCTGGATGTAACTGAAGCTCAACGGTATAAGCAGATGCGAAAGACTAAGCGTCTTCTCTCTGTCCACCCCATGGATCTTGACATGGACGACTATAGCGCTCACTCTCGCAGACAGTCTGTCCAGTACATCCATGAAGACAGAGGTCAGCGAAACGATATAGAGTACAACTCTGACATGTACCATCACCACAATCATCGCATGAACCGCAGGAAAAGCCTCGACAGGTTCTCGCGCCCAGatgATGGCATATACTCTGAACACAGAATGGTACgtgctcgctctctctctaAAATCAACTCCTCTGTGGCCCCGCGCCAGATCTATCTGGACACTTCAGAGGAGGAGGATATGATCCGTTACCCCGTCTATCAGCTGCCCTCACGCCGCCGCAGTCGAGCATCCTCTcaggaaaacattcatcagagCGCCCCACCGATCAATGAACTCAGCAAAAGAATGTCTGCCATTGAGAGTCTTTTAAATCGACTGGAAGAGAAAATTACCTTGCCTTCAGATCAGCCTGTCCACCCCACGGCAGGACAGATGGAGGAGGAGAAGCTGAGGAGAAAACTAGATGAGCTGATGAGTGACAAGGCGCTTTCCTCTGATGAGGAAGAGCCGAAGAGACCTCCTCAGTCCAAAGGGTCCGCTGTGAGGGGGGTTCAGGCTCCAGTGGCCCCAGTATCCCAAGAACCCTTGAGTTCATCCAGCGATGAGATGCCCACCGAAGCACAAAAGAGATCCACCGCGGCGGCCCTATGCGACATCACAACTGAGATTCTAAGAACAATTAATGCCACAGAAAGCGCTATGAACGAGTTGGCCCCCTCAAATCCTAATGACAGACTTCAGTTAGCGGCCACAGAGCTTAAGCAGGCTGATGATGCATACAGGGAACTTGAGGAAAATGTGTACATGACTGCAGGGAAGTCCTTTGATATGGCTAGAAAGTTGCAAATGATTGAGCAGAATGCCAAGAATCACTACGGAGGCCCATTAACTGATTCAGAGCTCTCTGAACTGGAGGACCAGGTTGCTGTGGCAGCTGCCAAAGTTCAGAGCACAGAAAGTGAGgTCTCAGACATTGAGGGCAAGATAGCTGCTTTAAGTACTAAAGGATTATCATTTGATAAAGCCAAGAAAAAGGCACTGAGTATACAACAAAAAAGGAAGTTTTCCCAAGACAGGGTACACTATTAAGTGTAAAGGACATCATGTTCGCCTCTGTAACACGTTGCATATTTCCTGTTGTGATATCTGTGGATATGTTATCTGACACTTGATATCTGTGCctataaattagtattttacttCACGATGTGTTCAAGATTTTTGACACCGATCTTGACTTAATACTAGTAAACCCTTTGTCTTGTGTAAATTGTATTAAGCAAGTTAATCAAATGCCAATCTAGCTAAAATCagtattagtaaaataataaaaacgtttaCAGTAAACATGTGTCAAACAAGTATTCATGTCAAGAAAAAACgtgacattttataaataaaaaaggttgtTTAATCAAgctataaatgttaaattaaacatcTAACACTCAAATGTACCCTTagaaaatacattgtaaaacaACTTCTTTGTCATGCTTTTCCTGCTTGAAGAAAGATATTAATTTGCACAAGTAAACTCTGGTTTGCTGGTCACCCAGTCTGTTAACTAGCTTTAAATAACAGCTGGCCGAGGCTAAGAGAGCATCTTTTTCAGGAGGGCTTTTGTCTTCTGAACATTAtcagatattattttttatatagataATGCAACCCAAAGTTTGAGGCACCATTACAAGAAGGGGATAGCCGTTGGATGCTAACGAGCCAAGACTTCTCCTCTTTGCTGCATTCGCGTGCTGCCCTCTAGAGGAGAAGGCGTTCAATCCTAAACGGCACAAACCATGTATTTGGGAATATTCTATTCTTCAAGTAAAcagaatttaatatatattagattataGTTAGAATTATGAGATTACATTATTAGGCTGAATAAAGCGGTAAAACAACGCAAATGACACATAATAAAAGTGAAACATCAAAAAAtgtggctctttttttttatataaagaccATGAAAATGATGATATGAAA
>XM_043241364.1
CTCTGCcacaacatttcatttgaaaaaccAGACATGTGATTACGATTGCCATACCTCTGACTATCCTCCCATTATCTGCCTCATCCCGAGAGACTTGGCAAGAGCAGCTACTTGTCTGCAAGCAAGatcaactAAGCTCCGAACATGGACACGAAGTTGGACCTGTCCAGGCTAACAGAAGAGGAGGCCAAACATGTGTGGGAAGTCATTCAGAGAGACTTCGTCCTTAGGAAAAAGGAAGAGGAGAGGCTTGGGGAGCTTAAATCCAAGATTGATAAGGAAGAATCAAAGAGGGAGCTCCTGGGATCTCAGTCCAACCTGGCGGACTCTCACTGCATCCGCTGTCTGCAGCCCTTTAAGTTCCTGGTGAACAGCAAGCGGCAGTGTATCGACTGTAAACTTTTCACCTGCAAGACCTGCAGCCGCTACAACAAAAAGGAGCGCGGCTGGGTATGCGACCCCTGCCGCATGTCCAGggTCCTGAAAATCGGAACCTTGGGGTGGTACCATGACAACGTCCGCTCTCGCTTCAAGCGCTTTGGCAGCGCGAAAGTGATGAGGTCACTGTACAAGAGATTAAACGAAGAGGGTCACCGTGATGATGACACACAGAGCATGCCTGATGTGCGCAATGCGTATAACGGGCATGAAGATGAACATCTGGATGTAACTGAAGCTCAACGGTATAAGCAGATGCGAAAGACTAAGCGTCTTCTCTCTGTCCACCCCATGGATCTTGACATGGACGACTATAGCGCTCACTCTCGCAGACAGTCTGTCCAGTACATCCATGAAGACAGAGGTCAGCGAAACGATATAGAGTACAACTCTGACATGTACCATCACCACAATCATCGCATGAACCGCAGGAAAAGCCTCGACAGGTTCTCGCGCCCAGatgATGGCATATACTCTGAACACAGAATGGTACgtgctcgctctctctctaAAATCAACTCCTCTGTGGCCCCGCGCCAGATCTATCTGGACACTTCAGAGGAGGAGGATATGATCCGTTACCCCGTCTATCAGCTGCCCTCACGCCGCCGCAGTCGAGCATCCTCTcaggaaaacattcatcagagCGCCCCACCGATCAATGAACTCAGCAAAAGAATGTCTGCCATTGAGAGTCTTTTAAATCGACTGGAAGAGAAAATTACCTTGCCTTCAGATCAGCCTGTCCACCCCACGGCAGGACAGATGGAGGAGGAGAAGCTGAGGAGAAAACTAGATGAGCTGATGAGTGACAAGGCGCTTTCCTCTGATGAGGAAGAGCCGAAGAGACCTCCTCAGTCCAAAGGGTCCGCTGTGAGGGGGGTTCAGGCTCCAGTGGCCCCAGTATCCCAAGAACCCTTGAGTTCATCCAGCGATGAGATGCCCACCGAAGCACAAAAGGTGTACATGACTGCAGGGAAGTCCTTTGATATGGCTAGAAAGTTGCAAATGATTGAGCAGAATGCCAAGAATCACTACGGAGGCCCATTAACTGATTCAGAGCTCTCTGAACTGGAGGACCAGGTTGCTGTGGCAGCTGCCAAAGTTCAGAGCACAGAAAGTGAGgTCTCAGACATTGAGGGCAAGATAGCTGCTTTAAGTACTAAAGGATTATCATTTGATAAAGCCAAGAAAAAGGCACTGAGTATACAACAAAAAAGGAAGTTTTCCCAAGACAGGGTACACTATTAAGTGTAAAGGACATCATGTTCGCCTCTGTAACACGTTGCATATTTCCTGTTGTGATATCTGTGGATATGTTATCTGACACTTGATATCTGTGCctataaattagtattttacttCACGATGTGTTCAAGATTTTTGACACCGATCTTGACTTAATACTAGTAAACCCTTTGTCTTGTGTAAATTGTATTAAGCAAGTTAATCAAATGCCAATCTAGCTAAAATCagtattagtaaaataataaaaacgtttaCAGTAAACATGTGTCAAACAAGTATTCATGTCAAGAAAAAACgtgacattttataaataaaaaaggttgtTTAATCAAgctataaatgttaaattaaacatcTAACACTCAAATGTACCCTTagaaaatacattgtaaaacaACTTCTTTGTCATGCTTTTCCTGCTTGAAGAAAGATATTAATTTGCACAAGTAAACTCTGGTTTGCTGGTCACCCAGTCTGTTAACTAGCTTTAAATAACAGCTGGCCGAGGCTAAGAGAGCATCTTTTTCAGGAGGGCTTTTGTCTTCTGAACATTAtcagatattattttttatatagataATGCAACCCAAAGTTTGAGGCACCATTACAAGAAGGGGATAGCCGTTGGATGCTAACGAGCCAAGACTTCTCCTCTTTGCTGCATTCGCGTGCTGCCCTCTAGAGGAGAAGGCGTTCAATCCTAAACGGCACAAACCATGTATTTGGGAATATTCTATTCTTCAAGTAAAcagaatttaatatatattagattataGTTAGAATTATGAGATTACATTATTAGGCTGAATAAAGCGGTAAAACAACGCAAATGACACATAATAAAAGTGAAACATCAAAAAAtgtggctctttttttttatataaagaccATGAAAATGATGATATGAAA

Function

symbol description
mlpha Predicted to enable actin binding activity and myosin binding activity. Acts upstream of or within pigment granule dispersal. Predicted to be active in cortical actin cytoskeleton. Is expressed in melanocyte. Human ortholog(s) of this gene implicated in Griscelli syndrome type 3. Orthologous to human MLPH (melanophilin).
mlph Enables myosin binding activity; protein-macromolecule adaptor activity; and small GTPase binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within melanocyte differentiation; melanosome localization; and protein targeting. Located in dendrite and perinuclear region of cytoplasm. Implicated in Griscelli syndrome type 3.

NR:

description
PREDICTED: melanophilin-like isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241363.1 True 2766 mRNA 0.44 15 7010883 7019915
XM_043241364.1 False 2595 mRNA 0.44 14 7010883 7019915

Neighbor

gene id symbol gene type direction distance location
lrrfip1b lrrfip1b,LOC107688829,LOC107677622,LOC107596315,LOC107738309,LOC107748528,LOC107586315 coding downstream 388 6983245 ~ 7010495 (-)
st6gal2b LOC107748529,LOC107688830,LOC107559923,LOC107738307,LOC107596313,LOC107677626 coding downstream 39270 6956132 ~ 6971613 (-)
fhl2b fhl2b,LOC107688912,LOC107559916,LOC107596312,LOC105896541,LOC108437838 coding downstream 137023 6867944 ~ 6873860 (-)
tgfbrap1 tgfbrap1,LOC107748533,LOC107688833,LOC107738304,LOC107596311,LOC107660108,LOC107559914 coding downstream 143821 6854340 ~ 6867062 (-)
inpp4ab inpp4ab,LOC107566790,LOC107705620,LOC107660104,LOC107748537,LOC107688837 coding downstream 448093 6526834 ~ 6562790 (-)
ackr3b ackr3b,LOC107709570,LOC107586318,LOC107688828,LOC107677631,LOC107748917,LOC107596319 coding upstream 31269 7051184 ~ 7055846 (-)
faimb faimb,LOC107709569,LOC107586372,LOC107688905,LOC107677619,LOC107562225 coding upstream 226341 7246256 ~ 7248116 (-)
slc19a2 slc19a2,LOC107586324 coding upstream 234949 7254864 ~ 7260771 (-)
psmb3 psmb3,LOC107688824,LOC102792592 coding upstream 249356 7269271 ~ 7272477 (-)
LOC122347322 zgc:162999,LOC107586326,LOC107562228,LOC107688822,LOC108438154,LOC107709582,LOC107677632,LOC107719292 coding upstream 313108 7333023 ~ 7337888 (-)
G43251 NA non-coding downstream 187862 6815260 ~ 6823021 (-)
G43161 NA non-coding downstream 527490 5995956 ~ 6483393 (-)
G43173 NA non-coding downstream 987373 6018440 ~ 6023510 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding downstream 1255419 5747766 ~ 5755464 (-)
LOC122346635 NA non-coding downstream 1263489 5745439 ~ 5747394 (-)
G43472 NA non-coding upstream 409863 7429778 ~ 7430446 (-)
G43478 NA non-coding upstream 441276 7461191 ~ 7498435 (-)
G43516 NA non-coding upstream 778209 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 836550 7856465 ~ 7857596 (-)
G43513 LOC107688815 non-coding upstream 1029482 8049397 ~ 8050678 (-)
G43248 pou3f3b,LOC107688836,LOC107559920,LOC107660107,LOC106574614 other downstream 183155 6804058 ~ 6827728 (-)
cacnb4b cacnb4b,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 other downstream 485933 6041876 ~ 6524950 (-)
G43180 nck2b,LOC107688832,LOC107748532,LOC107660111,LOC107738306 other downstream 709746 6273323 ~ 6301137 (-)
desmb desmb,LOC107566324,LOC107660100,LOC107705613,LOC107688844,LOC107566784,LOC107748575 other downstream 1044279 5958793 ~ 5966604 (-)
mylkb mylkb,LOC107688847,LOC107748549,LOC107555454,LOC107705608,LOC107566310,LOC107660138 other downstream 1274263 5723468 ~ 5736620 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other upstream 88247 7108162 ~ 7245179 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other upstream 254925 7274840 ~ 7314774 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other upstream 297032 7316947 ~ 7329565 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other upstream 559980 7579895 ~ 7586367 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other upstream 717175 7737090 ~ 7770451 (-)

Expression


Co-expression Network