LOC122346645 (LOC106676354,LOC106674584,LOC106676400)


Basic Information

Item Value
gene id LOC122346645
gene name LOC106676354,LOC106674584,LOC106676400
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18743065 ~ 18744116 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241381.1
acaaGTTTACCCCATAGCAAAATCATGGCtctttcttatcatttttacaaatgcttaaacacagcatgtcaaaaataaagagcTAATGTTCCAAACTCTAACTATATTGTAAAGCCTCTACTTctgtaaaaacagcagcttaaaagagctgataataattattttaattactgataatTAAGAGATAGCTGATTCCAATCTTATTGATTAATTCCAAGTAATGGATTACATGGATTTGAACACTTTCTGGACTggtttttgttcaaaacaatacagaacaacagaaaaactgaaaaagaaagaagatgtcGGGACGAGGAAGAGTTGGACGAGGGAGAGGACAAGGTAgacgagggagaggagaaggtggacgagggagaggagaagctggactagggagaggagaaggtggacgagggagaggagaaggtggacgagggagaggagaagctgGACTAGGGAGAGGGCAAGGTGGACTAGGGAGAGGAGAAGCTGGACCGGGACAAGGTAGAAGAGGTAGGGGTAGAGTAAGAGCTGTAAGAGTAAGAGCTGTTGTTACAGATGAAATAAGAGCCACTATTATTGACCACGTGATAAACCATGGTCTGTCATTGAGAGAGGCAGGTGAAAGAGTCCAGCCCAATCTTAGACGGTCAACTGTGGCATCCATTATCCGAATTTTTCAACAAACCAACAGAACACAACGACTTCCTTGCTCTGGGGGAAGAAGAAAACTGCTCACTGAGGACCAAGAGCATGCTATTGTAGGAATGTGGAAAGCATCAGCCTGGCTACCATCACTCGAactctgaacaaacacagaattCGAATGAAACAGCTGTACAAAGTGCCCTTTGAAAGAAACA

Function

NR:

description
uncharacterized protein LOC106676354

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241381.1 True 866 mRNA 0.43 3 18743065 18744116

Neighbor

gene id symbol gene type direction distance location
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding downstream 37333 18702854 ~ 18705732 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding downstream 254191 18458127 ~ 18488874 (-)
LOC122346396 gabrg3 coding downstream 287278 18363838 ~ 18455787 (-)
nipa1 nipa1,LOC107716965 coding downstream 535431 18205651 ~ 18207634 (-)
nipa2 nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725 coding downstream 537831 18198983 ~ 18205234 (-)
LOC122347578 LOC107678224,LOC107752100,LOC107581387 coding upstream 19129 18763245 ~ 18765483 (-)
LOC122346582 LOC107584426,LOC107673614,LOC107712092 coding upstream 241934 18986050 ~ 18988440 (-)
cnga3a LOC107585144,LOC107711084,LOC107673541,LOC107685324,LOC107733584 coding upstream 327289 19071405 ~ 19078891 (-)
hdac7b NA coding upstream 369562 19113678 ~ 19123976 (-)
tns2b LOC107711076,LOC107673525,LOC107585141 coding upstream 408923 19153039 ~ 19173171 (-)
G46421 NA non-coding downstream 21897 18656842 ~ 18721168 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding downstream 56241 18603991 ~ 18686824 (-)
LOC122346470 NA non-coding downstream 99712 18642722 ~ 18643353 (-)
G46172 NA non-coding downstream 383084 18359679 ~ 18359981 (-)
G46160 NA non-coding downstream 409799 18332843 ~ 18333266 (-)
G46432 LOC107752101,LOC107678225,LOC107581302,LOC107551936,LOC107753899,LOC107672678 non-coding upstream 17468 18761584 ~ 18762435 (-)
G46439 NA non-coding upstream 113596 18857712 ~ 18858471 (-)
G46444 NA non-coding upstream 138736 18882852 ~ 18886400 (-)
G46463 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 non-coding upstream 226054 18970170 ~ 18972370 (-)
G46476 NA non-coding upstream 299500 19043616 ~ 19043869 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 25577 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 35469 18706623 ~ 18707596 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 97931 18644306 ~ 18645134 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 968958 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 1328926 17382327 ~ 17414139 (-)
G46478 NA other upstream 311030 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 370945 19115061 ~ 19149731 (-)
tsfm tsfm,LOC107711018,LOC107585120 other upstream 809201 19553317 ~ 19555942 (-)
tomm6 NA other upstream 1097363 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 1098928 19843044 ~ 19847432 (-)

Expression


Co-expression Network