slc6a22.1 (slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697)


Basic Information

Item Value
gene id slc6a22.1
gene name slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20116875 ~ 20125261 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241466.1
aacacacacacgcatgtgaTTCTACGCTCTCGGTTCTGTATGGACTCGTTTCCCTTAACGAGAGGAGGAGAGTGAGCGAGGGGTGGGCTTCAGCGGCTGTGTTATAACGACCGAAACACACTGAATTAAGCATAACTTCATGGCCAAGGTAAACGCGGTAGACTTCCTGAACTTTTGACCAGTTTCCTCCATCAGAAGTATTTCACTTGGCACCCGGCGTCTCCTCGGCGTGGGTTGAAGAGCACAAGTGTTCGGCTGCTGAATGTAGGCCAAAGGGCACGAACAAAAGCGCAATAACTGAtgaCATGGAAATGCAACATGATCCAGATTTGCAGTTTAAACTGGCTTATTCAGATTCAGAAAGAATCGACACTGGCATTAAAACCCAAGCGAGAGGCCAGTGGTCCAGTAAAGTGGAGTTTATCTTAGCTGTTGCTGGCCAGATCATTGGTTTGGGAAATGTGTGGAGATTTCCATATCTGTGTTACAAGAATGGAGGAGgaGTGTTTTTCATTCCGTATGTGATCTTTCTGTTTGCCTGCGGCATTCCTCTTTTTCTTATGGAGACCGCTTTGGGCCAGTACACCAGTCAAGGGTCTGTTACCTGTTGGAGGAAGATCTGCCCACTATTTGAAGGTCTGGGTTACGGGAGTCAGGTGGTTGTCTTCTATTCCAGTGCCTACTACATCATCATTTTGGCCTGGGCTTTCTTCtatctcttctcttcttttagTGGTGAACTGCCATGGGCTAGCTGCAGGAACTGGTGGAATTCAGAAAACTGTGTTGAGTTTAACAGAATAGGAGGGACAAGAAACCTGAGCTTTATGGAAAATTCATCCTCCCCTGTTAAAGAATTTTGGGAGAGGCGAGTATTGAATATAACCGGAAATGTAAATGAGCTGGGAAGTTTGAGATGGGAGCTGGCTTTGTGTCTCCTGCTGGCCTGGATCATTTGCTACTTCTGTGTGTGGAAAGGAGTGAAGTCCACGGGCAAGgtTGTGTATTTCACTGCTACGTTTCCCTATGTTATGCTGCTGGTGCTTCTGATTCGAGGTCTTACATTGCCTGGAGCCATTGATGGCATCAACTTCTACCTCTATCCAAATCCAGCACGACTTACAGACCCACAGGTATGGATGGATGCTggaacacaaatattttactCTTACGCTCTCTGCATTGGGTGCCTTACAGCTTTGGGAAGctacaataaatacaacaacaacTGCTACAAAGATTGTGTTTATCTGTGCCTGCTGAACAGTGGAACCAGTTTTGTAGCTGGCTTTGCTATCTTTTCAGTTTTGGGCTTCATGGCCTTCGAACAGGGAGTCGATATTTCAATGGTAGCAGAGTCAGGTCCTGGTTTGGCCTTCATTGCATATCCACGAGCTGTAGCTATGATGCCTATGTCTCAGCTGTGGTCCATATGTTTCTTCCTCATGATTATTCTGTTGGGGCTTGACAGTGAGtttgtggGTTTGGAGTCTCTCATGACAGCCATAACAGACATGAACACCAATTTCTTCCTCCAAGGACATCGTCGTAAACTCTTTCTCCTCCTCATTTGTGTGGGCTGCTTCCTCATTGGCCTCCTGATGGTAACAGAGGGTGGCCTGTATGTCTTCCAGTTATTTGATTACTATTCCTGCAGTGGAATGACCCTCCTCATATTTGCCATTGCACAGTCGATATGTATTGGCTGGTTTTACGGTGCCGATCGTCTGTATGAAAATATTGTTGGCATGATCGGTTATCGTCCTTTAACACTAATGAAATACTGTTGGAAATATATCACTCCTATTGTGTGTATAGGAACATTTATCTTCTCTTTGGTCAAATTCACTCCTCTAAAGTTTAACAACACATCTGAATACCCATGGTGGGGTTATGCTGTTGGCTGGTGGTTCACCCTCTCCTCGACATTGATGGTTCCCATATGGATGATCTACGTCATCCTTATCACTCCTGGTACACTGAAACAGagactGCGTGTCCTTTGCACTCCAGCAAGCGATCTACCTTTGACAACAGAAAGACGAAAAGAAACCCTGTGACTTCTGTGACCGTACAAAGTGTCCTATGACTGATAGAGAAACATTGAGGTGAAGAAAAACATCCTTGGGCTGTATTTTGGACAACTTTTGATATCCTTAAGTGCCTTTGAAGATACACATTCTTGTGAGATCTCAAGAAGGCGCAAACACAAACTGTATATGACTGTCAAGTTATTGATTTTTCCTATCTTAGATTTTCAATTGCAAGAAATTAAATGtggatttaaactgaaaatgaaagatgaaatgaaagCTCAACTTCCACGTTCGACTGTATCCAAGGAAAAACTCAGTTTGACGTCATTCTTAAGTGTGATAGCATCAACAACTTACTGTATCATAAACATTCACAAGATATCAGTTCTTCTATGAgatagaaaaaaactgtttattatcATGAACCAATGGACCAATGTTCATTGTTGGTGTATGATTAGAAAATGTTGGATAATGTGTTAACTTTCAGTTAGAGAGACTAACCAGAGCTGCTCACTATGACATACTTTATGCCTTTTTAAAAGAAGTGCAAGGCACATTTGGTTAAATTTCTAtcaaaactttaaatgtaacagTATTTTAGAATAGTAACTTTTTTATGGGTCAATCATGCACTTGCCAATTTTGTGCCTGTAGTTAAGTGCTGGTGTTTTAAGAAAGTATTAGAAAAAATTatgttggtttattttattacaacattTGTAATGCATTCAAGAGAAAATATATCCatattttgcttagttctgcttggatgtacagtatattctatattttacaatatgtatttttagttaaatgcatattttaagggAATGTATGTAGGTCGTTTAAGcttatgtgcatttttataacTGATGCTATTGAAAGGTCTGTGGTTAATGTTCTAATAAATATCCTGTTTAAATCAA

Function

symbol description
slc6a13 Orthologous to human SLC6A13 (solute carrier family 6 member 13).

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like isoform X1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241466.1 True 2965 mRNA 0.41 16 20116875 20125261

Neighbor

gene id symbol gene type direction distance location
rab44 NA coding downstream 21358 20084841 ~ 20095517 (-)
trub2 LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444 coding downstream 43378 20070910 ~ 20073497 (-)
hdhd3 hdhd3,LOC107712106,LOC107584439,LOC107673581,LOC107667329 coding downstream 46668 20068870 ~ 20070207 (-)
slc2a11a slc2a11a,LOC107712104,LOC107673621,LOC107584427,LOC107667316,LOC102307538 coding downstream 60120 20051004 ~ 20056755 (-)
sfi1 LOC107712061,LOC107568189,LOC107667358,LOC107721191 coding downstream 91004 20016546 ~ 20025871 (-)
LOC122347299 LOC107683669,LOC107709781,LOC107701556,LOC107709782,LOC107704729,LOC107585716,LOC107739789,LOC107585717,LOC107585718 coding upstream 112013 20237274 ~ 20238660 (-)
hemk1 LOC107750260,LOC107712066,LOC107657999,LOC107567089,LOC107584453 coding upstream 298450 20423711 ~ 20431177 (-)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475 coding upstream 657183 20782444 ~ 20786555 (-)
gpr61l LOC107658083,LOC107750281,LOC107749617,LOC107567083,LOC107584511,LOC107673479 coding upstream 669985 20795246 ~ 20799151 (-)
parp3 parp3,LOC107749614,LOC107750280,LOC107658076,LOC107673445 coding upstream 674833 20800094 ~ 20805651 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding downstream 1616 20054866 ~ 20115259 (-)
G46803 NA non-coding downstream 148415 19968246 ~ 19968460 (-)
LOC122347207 NA non-coding downstream 236287 19877312 ~ 19880588 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 278828 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 314609 19801243 ~ 19802266 (-)
G46836 NA non-coding upstream 2687 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 24286 20149547 ~ 20152787 (-)
G46842 NA non-coding upstream 48277 20173538 ~ 20174291 (-)
LOC122347561 NA non-coding upstream 114541 20239802 ~ 20240436 (-)
LOC122346791 slc6a11a,LOC107673588,LOC108440580 non-coding upstream 120447 20245708 ~ 20247348 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 14416 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 116237 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 160145 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 269443 19843044 ~ 19847432 (-)
tomm6 NA other downstream 273881 19841479 ~ 19842994 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 36179 20161440 ~ 20166279 (-)
G46926 NA other upstream 403918 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1223358 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2614711 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 2996522 23121783 ~ 23163157 (-)

Expression


Co-expression Network