zgc:172271 (zgc:172271,LOC107568196,LOC107721198,LOC107667401,LOC108440373,LOC105889207)


Basic Information

Item Value
gene id zgc:172271
gene name zgc:172271,LOC107568196,LOC107721198,LOC107667401,LOC108440373,LOC105889207
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20009514 ~ 20016235 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241473.1
tttgtttttttcagactgACGCAAACCTAGGCAGTGAGATCTTCAAGAGACATGCCTGTTTCACTGAAACGCCTCTCCAAAACTCGATGTAGACAGTTACCGTGATTCATTTGCTCTTAAAAGTTTTCTGGTAACTATGATGAAGCGAGTTAGTATTACTGTCATCTTATTGCTGTGCTCCATTAGCAGCTGGGGTAAGAAGATGCGCTGGTGTACAGTCTCAGAGCCGGAGCAGAGGAAGTGTGCTGAGCTGGCCAAAGCTCTAGTCGCTGTGCTTCCAGCCATAGCTGTCACAGCATTTGGTCGTCTCTCATGTGTGAAAGCTTATGGCACCGCCGACTGCATTAGTAAGATACGGGATAATAAAGCCGACCTAGTGACTCTGGATGCTGGAGAGGTGTACTCTGCGGTAAAACAGTTTGGGCTCACAGTAGTTGCAAAGGAGATCTACAGAGATGGTGGCTGTATTCTTGCGGTCGCTGTGGTAAGGAACAGCAGTACTTTAGATATGCGCTCTTTACGGGGCAGTAGGAGTTGTCATAGTGGAGCTCGCTGGACTGCAGGTTGGAGTCTACCTTTGGGTCATCTCCTTTCTCGAAACCTCCTGCCCTGGACAGAGGATGAGCCCCTCAGTCAggCGGTTAGTGCTTTCTTCAATGCCAGCTGTGTGCCTGGAGCAACTACAATGGCACCCAGCCTTTGTTCCTTGTGCCAGGGTCAAAGGTCATACATTCGTCAGAAAAATTTCCATTGTGAGACATCTCACAGTGAACCATTCTACCACAATCAAGGAGCACTCAGATGTTTACAGTCACGCGCAGGGGATGTTGCCTTTGTGGATCACACAGCTCTGGACAGCATAGATGAAAGCGAGAAGGATGAGTTCCGACTGTTGTGTGCAGATGGAACTCATGCTCCCCTcagcagttttaaaaaatgtaaccttgGACGAGGCCCTGGAGGAGGTGTGGTCACACGAATGAACACCCGCCAAATCGCTCGAAAGTTCTTGGTAGCCTCCCAGATCTCATTTGGTTGGAGGGGAAGGGAGCGTCACCGCTTCCAGCTGTTTGAATCCGCATCCTACGGTGGGAGTGACCTTCTCTTTAAAGATGTGACTGACAAATTATCAGTTCTGATGGAAGACATGGATATGAGCCAGGTTCTGGGACTGGACTATGTGGCCTTGCTCAAGGGCCTTGGTCATGAAGGTAGCTCATTGGAGGACAGTGTGGTGAGGTGGTGCTGTATAAGTTATGCTGAACAGAAGAAATGCGAGCAGTGGGCTCTTAGCATAAAATCAGATCCTCTGGTGTGTGTGAAAGCTTCATCTATGAGTGACTGCATTGAGAAGATCAAGAGGGATGAGGTGGATGCTGTGTCTCTTGATGCCACTCATGCATTCATAGCTGGGAAATGTGGCCTTGTCCCTGTTGTGACTGAATATTACgGAGAGAAATGTGAGAATCCTGAAGGAGTTGGTCATTTTGAAAGAGATGAATTACCACCAGTGTATGGTGTGGCAGTTGTACGTCGGACAAGTAGGAGTTTATATTTTGGAAGTCTGGGCGGCAGACGCTCATGCCACGGTCACATGTACAGCCCTGCAGGCTGGGTTTTACCCGtgagacacacactcagcacGGAGCACAACAGCAGCGCCCCATGTCAGCCGAATAATGTGTACAGTGAGGTGTTTTGGAAAGGTTGTTTGCCAGGAGGTCAAGGCAATCTCTGTAAGGTGTGCATGGGTGGCACTGAGGAAGCTGCCACCAAACGGTGTGCTGACAACCACAATGAGCGTTACTATGGCAATATGGGTGCATTAAGATGCCTGGTTGGAGACCAGAGTGGGAAGAGCTTTGGAGACGTGGCATTTATGGAGCACCACAATCTGGAGAGCAACATCGAACGTCTAAACACAAGTGGCTGGGCAGAGGGATGGCTCGCTTGGGACTTTGAGTTGCTTTGTGGAGATAGCAGCCGGGCTCCTCTGACAGACTGGAAGACCTGTAACTTAGGAGCAATCCCTCCAAATATTGTTATGACGCGTCCTGTCCTTACAGCTCGCATTTATGACCTCTTAATGAAGTCACAGGAAACCATAGCAGCTCGTCCAGATTCTGGCTTCCGCCTGTTTGAGTCTCAGCAGTATGGAGAGAGTGACCTGCTCTTTAAAGATGCTACAAGGTGCCTCGTTCACACCAGTCACATGGACTACCGCACCATACTCGGAGAAGAGTTCTATTCACAGGCTGAGAGCATCTTTAACTGCACACATTCAAATATCTTGCAGTTCTGCAATCAAGATGTGTGCAGCATATTCTAAACAatctttatgattttt

Function

symbol description
zgc:172271 Predicted to enable metal ion binding activity. Predicted to be involved in iron ion transport. Predicted to act upstream of or within ion transport and iron ion homeostasis. Predicted to be located in extracellular region. Predicted to be active in endosome; extracellular space; and plasma membrane.

NR:

description
protein SFI1 homolog isoform X3

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008199 ferric iron binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241473.1 True 2347 mRNA 0.49 17 20009514 20016235

Neighbor

gene id symbol gene type direction distance location
sirt4 sirt4,LOC107584486,LOC107712059,LOC107568197,LOC107721201,LOC107667314 coding downstream 160 20006054 ~ 20009354 (-)
rft1 rft1,LOC107584424,LOC107673548,LOC107721169,LOC107712099,LOC107568194 coding downstream 4829 20001100 ~ 20004685 (-)
eefsec eefsec,LOC107584423,LOC107667374,LOC107568193 coding downstream 14842 19988919 ~ 19994672 (-)
LOC122347402 LOC107673562,LOC107712070,LOC107584441,LOC105017189 coding downstream 43090 19965403 ~ 19966424 (-)
arpc4 arpc4,LOC107721188,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding downstream 44693 19961196 ~ 19964821 (-)
sfi1 LOC107712061,LOC107568189,LOC107667358,LOC107721191 coding upstream 311 20016546 ~ 20025871 (-)
slc2a11a slc2a11a,LOC107712104,LOC107673621,LOC107584427,LOC107667316,LOC102307538 coding upstream 34769 20051004 ~ 20056755 (-)
hdhd3 hdhd3,LOC107712106,LOC107584439,LOC107673581,LOC107667329 coding upstream 52635 20068870 ~ 20070207 (-)
trub2 LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444 coding upstream 54675 20070910 ~ 20073497 (-)
rab44 NA coding upstream 68606 20084841 ~ 20095517 (-)
G46803 NA non-coding downstream 41054 19968246 ~ 19968460 (-)
LOC122347207 NA non-coding downstream 128926 19877312 ~ 19880588 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 171467 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 207248 19801243 ~ 19802266 (-)
G46658 NA non-coding downstream 217186 19791642 ~ 19792328 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 38631 20054866 ~ 20115259 (-)
G46836 NA non-coding upstream 111713 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 133312 20149547 ~ 20152787 (-)
G46842 NA non-coding upstream 157303 20173538 ~ 20174291 (-)
LOC122347561 NA non-coding upstream 223567 20239802 ~ 20240436 (-)
mustn1a mustn1a other downstream 8876 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 52784 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 162082 19843044 ~ 19847432 (-)
tomm6 NA other downstream 166520 19841479 ~ 19842994 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 453572 19553317 ~ 19555942 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 79789 20096024 ~ 20102459 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 145205 20161440 ~ 20166279 (-)
G46926 NA other upstream 512944 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1332384 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2723737 22739972 ~ 22750947 (-)

Expression


Co-expression Network