rft1 (rft1,LOC107584424,LOC107673548,LOC107721169,LOC107712099,LOC107568194)


Basic Information

Item Value
gene id rft1
gene name rft1,LOC107584424,LOC107673548,LOC107721169,LOC107712099,LOC107568194
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20001100 ~ 20004685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241475.1
CCAAATGGCAAATCCATTAGGAGACTACTGTAGTACAGTGCTATAGTATAATTTCTGTATAATGGACCGAATGTAACGTTTATCACCGGCGAATCTCGGTGATGTTGCTGATAGTgagtttaaataaacagttgaGTTGAAAAGTAAAGCTTACAATGGGCTCAGAGGATGTGCTCAAGAGTGCTTCAAAACTGGCCTCTTATAATGTTCTGCTTCAGGTGATGTTTCGAGTATTGACGTTTCTCTTGAACGCATTTACTTTACGTTTTGTGTCTAAGGAGCTGATAGGTGTGGTAAATGTCAGGTTGATGCTGCTCTATTCCACGTTGGTGTTTCTGTCTAGGGAAGCGTTCCGGAGGGCGTGTCTAAGCGGCGACGGGGCGGGGCGTAACTGGAGACAGGTTATCAATCTATTATGGCTCACATTTCCTGTGGGTTGTATGTGGGGTGTGGTGTTGGTGTGTGTCTGGTGGTGGCTGCTCCAGGCACCTGATCCAGAGTCCATCCCTCATTATGTCCCAGCTGTTGGATTGTTCAGCTTGGCTGCACTTACAGAGTTGCTGGCTGAACCTCTCTGGGTTCTTGCCCATGCACACATGTTCGTTCGTTTGAAGGTGATTGCTGAAAGCTTAGCCATGATTGCTAAATGTCTTGTAACTGTAATGATGGTGGTCTCAGCACCTCAGTGGGGACTCTATATCTTTTCTGCAGCgcagTGTGTCTATGCAGGGTTTTTGCtgctttgttacattttatacttcATTCGTTTTCTTGGCTCAGAGGaggcagagaaaaaaatgttcccTGTGAGTCGCATAACAGACCTTCTGCCATCTAGAGTGGATCATGAGccaCTACTAAACTGGAAGTTGACCACACTAACCTGGAGCTTTTTCAAGCAGTCATTTCTCAAACAGATACTTACAGAAGGCGAGCGTTATGTGATGACGTTTTTGAATGTGCTTAACTTTGGAGATCAGGGTGTTTATGATATAATAAACAATCTGGGCTCAATGGTAGCAAGATTCCTTTTTTTGCCGATTGAGGAGAGTTTCTATGTGTTCTTTGCTAAAGTCCTGGAACGTGGACGAGATGTACAACATCAAAAACAAGAGGAAGTTTCCATGGCAGCTGAAGTATTGGAATGTCTTTTGAAGCTGGTGCTTTTGGTTGGTCTTATCATCACAGTTTTTGGTTATGCGTATTCTCATCTGGCACTTGACATCTATGGAGGGGAACTTCTGAGCAGCGGAGCTGGGCCAGCTCTCCTACGGTGTTATAGTTGTTATGTTCTGCTGTTAGCCATTAATGGAGTAAcagagtgttttgtttttgctgccATGAGCAAAGAGGAAGTTGACAGATACAATCTTGTGATGCTGGGACTCTCAGCCTCATTTCTTCTCCTTTCTTATTGGCTAACGTGGATGTTAGGAGGCGTTGGCTTTATTTTGGCTAATTGCTGCAACATGGCTCTACGAATTACTCACAGTATTGTTTACATACATCGGTATTTCCTGCAGAGTGAATACACACCCCTGTGGGGGCTCCGTCCACATTCTGCTGTTATCATTGCACTTGGCGTGAGCTCAATCCTCACAACCTGCTCAGAGagCATGTTCTGCTGTGATGTTGGCTGGTTGCTAAGGCTGGTTCACGTTGCTGTGGGGGCGATTTGTCTCCTGGGAGTGGTCATCACCGTATTTCTGACAGAAACAAGACTTGTGCAGTTTGTCAGGACTCAGCTGTTACCAAAATACAGCAAGAAACGTACATGAGTTTTTCAACTTCACCGAGGATCATATTGTGGACCAGATTCATTGattgcaaaacaaacacagagaatATTGTGAtgtaattcaaaaatattaagggGTCGCCCAGTACGTAACTACTGCTCCAATGTGCCTGTCATTCCTTACGATTGTTCATCTTTTGCACATTAATGCTTGTTATTAGACATACAGAAGGTGTCTCTTGACTATTTGCATAATGTTACTGCCAGATATACTGTAGCTGTGTAAATCTGTGGTGAACTTTATATGAATGATTGATTGTATAAAatggttatatataaataatttaatggtACTGGGTACCTTTGTCTTAGTAAGGTGTGAGATGGACTGAAAAATATTATCTGTTATCATAATATCTGGGGGggaaaaacaaccttttttcATGACTGTACATTGTTTAGTTTTAGGGTTTTTTCTGACAATTTCTGAGAGCTTAACTGCatcaacattacattttaaaatatttttttgatgtatttttgatcaaataaatgcagtcttgat

Function

symbol description
rft1 Predicted to be involved in glycolipid translocation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation In. Orthologous to human RFT1 (RFT1 homolog).

NR:

description
protein RFT1 homolog

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K06316 RFT1; oligosaccharide translocation protein RFT1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241475.1 True 2303 mRNA 0.42 13 20001100 20004685

Neighbor

gene id symbol gene type direction distance location
eefsec eefsec,LOC107584423,LOC107667374,LOC107568193 coding downstream 6428 19988919 ~ 19994672 (-)
LOC122347402 LOC107673562,LOC107712070,LOC107584441,LOC105017189 coding downstream 34676 19965403 ~ 19966424 (-)
arpc4 arpc4,LOC107721188,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding downstream 36279 19961196 ~ 19964821 (-)
LOC122347206 wu:fd14a01,LOC107575389,LOC108443910,LOC108254796,LOC107571573,LOC107705004 coding downstream 41443 19949312 ~ 19959657 (-)
p4htmb p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 coding downstream 66675 19928355 ~ 19934425 (-)
sirt4 sirt4,LOC107584486,LOC107712059,LOC107568197,LOC107721201,LOC107667314 coding upstream 1369 20006054 ~ 20009354 (-)
zgc:172271 zgc:172271,LOC107568196,LOC107721198,LOC107667401,LOC108440373,LOC105889207 coding upstream 4829 20009514 ~ 20016235 (-)
sfi1 LOC107712061,LOC107568189,LOC107667358,LOC107721191 coding upstream 11861 20016546 ~ 20025871 (-)
slc2a11a slc2a11a,LOC107712104,LOC107673621,LOC107584427,LOC107667316,LOC102307538 coding upstream 46319 20051004 ~ 20056755 (-)
hdhd3 hdhd3,LOC107712106,LOC107584439,LOC107673581,LOC107667329 coding upstream 64185 20068870 ~ 20070207 (-)
G46803 NA non-coding downstream 32640 19968246 ~ 19968460 (-)
LOC122347207 NA non-coding downstream 120512 19877312 ~ 19880588 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 163053 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 198834 19801243 ~ 19802266 (-)
G46658 NA non-coding downstream 208772 19791642 ~ 19792328 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 50181 20054866 ~ 20115259 (-)
G46836 NA non-coding upstream 123263 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 144862 20149547 ~ 20152787 (-)
G46842 NA non-coding upstream 168853 20173538 ~ 20174291 (-)
LOC122347561 NA non-coding upstream 235117 20239802 ~ 20240436 (-)
mustn1a mustn1a other downstream 462 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 44370 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 153668 19843044 ~ 19847432 (-)
tomm6 NA other downstream 158106 19841479 ~ 19842994 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 445158 19553317 ~ 19555942 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 91339 20096024 ~ 20102459 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 156755 20161440 ~ 20166279 (-)
G46926 NA other upstream 524494 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1343934 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2735287 22739972 ~ 22750947 (-)

Expression


Co-expression Network