ruvbl1 (ruvbl1,LOC107673590,LOC107721190,LOC107568195,LOC107667375,LOC107712098,LOC107584430)


Basic Information

Item Value
gene id ruvbl1
gene name ruvbl1,LOC107673590,LOC107721190,LOC107568195,LOC107667375,LOC107712098,LOC107584430
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19995035 ~ 19999128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241476.1
ACTTCCTTAAATCGCCTTGGTTACCCACATGGAAACGCGGGTCTCTTGTGTTTGATTTCAACGGCCCTTCGTGTTCTAATCTTGAGGTTATTTTTCCAGTTTTATAGTGTTTGACTAACTAAAAAGAAACATGAAGATTGAAGAGgtaaaaagcacaacaaagacGCAGCGCATCGCTTCTCACAGCCATGTAAAGGGTCTCGGGCTGGATGAGGCCGGTAATGCTAAACAGTCCGCGTCAGGGCTTGTGGGGCAGGAGACAGCAAGAGAGgCTTGTGGCATAATTGTAGAGCTGATTCGTTCCAAAAAGATGGCTGGCAGAGCTGTTTTACTGGCCGGACCACCTGGAACAGGCAAGACTGCTCTAGCATTAGCCATGGCTCAGGAATTGGGAAATAAAGTGCCATTCTGTCCAATGGTGGGCAGTGAAGTGTATTCAACAGAAATCAAAAAGACAGAAGTGCTGATGGAGAACTTCAGAAGAGCAATCGGTCTGCGTATCAAGGAGACTAAAGAGGTGTATGAGGGAGAGGTCACTGAACTGACTCCTTGTGAGACGGAGAACCCAATGGGGGGCTATGGCAAGACTATCAGTCATGTCATTATTGGTTTGAAGACAGCAAAGGGCACCAAACAGTTGAAGCTGGATCCCAGTATCTATGAAAGTCTGCAGAAGGAGAGAGTGGAGGTCGGTGATGTTATCTACATCGAGGCGAACAGTGGGGCAGTCAAGAGACAGGGACGATGTGACACATTTGCAACAGAGTTCGATTTGGAAGCGGAAGAATACGTACCTCTCCCGAAAGGCGATGTCCACAAGAAGAAAGAGATCATTCAGGATGTTACACTTCATGACCTGGATGTTGCTAATGCAAGACCTCAGggaggccagGACATACTTTCTATGATGGGTCAACTGATGAAACCCAAAAAGACAGAAATCACAGATAAACTGCGAGGGGAGATCAATAAAGTGGTGAACAAGTACATTGATCAGGGTGTGGCAGAGCTGGTTCCTGGTGTTCTGTTCATTGATGAAGTTCACATGCTGGACATTGAGTGTTTCACTTACTTGCACCGAGCGTTAGAGAGTTCTATTGCTCCCATCGTAGTGTTTGCATCCAATAGAGGAAACTGCCTCATCAGGGGGACAGAAGACATCAGCTCTCCTCACGGTATTCCACTGGATCTGCTGGATCGAGTCATGATTATCAGAACTATGCTGTATACTCCTCAAGAAATGAAACAGATAATAAAGATTCGAGCTCAGACTGAAGGAATCAACATCAGCGAAGAGGCTTTATCTCATCTTGGCGAGATCGGTACCAAGACTACACTCAGATATGCAGTGCAGCTGCTGACCCCTGCCAGTCTGCTGGCACGAGTTCAGGGGAGAGAAGTAGTTGAAAAGGAACATGTAGAAGAAATTAATGAACTCTTCTATGATGCTAAGTCCTCTGCAAAAATCCTGCAAGATCAACACACCAAATTTATGAAATAACTCCAGCACTCCCTTTCACGTTCTTTGAATGGCCTGCTTTAGTTTGCTTTATTGGTTTAGTTCACACTTGTCACAATATTATAACAGTATGACAGTTGTTTTAAACCAGTGCACAGCTAATGTATTGTTCTACCTTATTGTGTCATTTGTTAGGCAAAAAGAACGGGAAAGAAAACATTCtctcaataattaataattaacatgcTTAGACAATTTAATTTCCTTAGTTTTATCCCACTTTTGTTATCCTGTAGGGTAGGTTTTCCAGTGTCCTGTCAGCtgttcatttttgtgttgttttgaaaataaatcttttttttataataatgtgaaatataaa

Function

symbol description
ruvbl1 Predicted to enable DNA helicase activity. Acts upstream of or within several processes, including axonemal dynein complex assembly; epithelial cilium movement involved in extracellular fluid movement; and regulation of heart growth. Located in cytosol. Is expressed in neural tube; neuromast; peripheral olfactory organ; and pronephric tubule. Orthologous to human RUVBL1 (RuvB like AAA ATPase 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060420 regulation of heart growth biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0071339 MLL1 complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K04499 RUVBL1, RVB1, INO80H; RuvB-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241476.1 True 1841 mRNA 0.43 11 19995035 19999128

Neighbor

gene id symbol gene type direction distance location
gata2b gata2b,LOC107712071,LOC107673559,LOC107584431,LOC107721170,LOC107667331,LOC107568181 coding upstream 12292 19977071 ~ 19982743 (+)
si:ch211-157b11.8 si:ch211-157b11.8,LOC107712072,LOC107584432,LOC107673560 coding upstream 22602 19966623 ~ 19972433 (+)
slc26a6l slc26a6l,LOC107712095,LOC107673476,LOC107584419 coding upstream 66691 19922524 ~ 19928344 (+)
LOC122347189 LOC107584426,LOC107712092,LOC107673614 coding upstream 77280 19914974 ~ 19917755 (+)
rereb LOC107673527,LOC107584416,LOC107568186,LOC107721179,LOC107712087,LOC107667365 coding upstream 95374 19889522 ~ 19899661 (+)
c6h1orf74 LOC107712101,LOC107584438,LOC107568182,LOC107721171,LOC107667327,LOC107673551 coding downstream 5676 20004804 ~ 20005960 (+)
eif4enif1 eif4enif1,LOC107673519,LOC107584417,LOC107667360,LOC107568191,LOC107712102 coding downstream 27799 20026927 ~ 20038497 (+)
patz1 patz1,LOC107568192,LOC107712103,LOC107584420,LOC107721193 coding downstream 40066 20039194 ~ 20050026 (+)
tgfa tgfa,LOC107712107,LOC107721172,LOC107673622 coding downstream 58502 20057630 ~ 20067203 (+)
entpd8 entpd8,LOC107673470,LOC107584429,LOC107712074,LOC107667330,LOC107567076,LOC107736630 coding downstream 79468 20078596 ~ 20084856 (+)
G46722 LOC107673562,LOC107584441,LOC105017189 non-coding upstream 28569 19965259 ~ 19966466 (+)
G46690 NA non-coding upstream 33050 19961209 ~ 19961985 (+)
G46711 NA non-coding upstream 45367 19949228 ~ 19949668 (+)
G46640 NA non-coding upstream 195523 19799012 ~ 19799512 (+)
G46633 NA non-coding upstream 204696 19789698 ~ 19790339 (+)
G46731 NA non-coding downstream 7036 20006164 ~ 20007343 (+)
G46733 sirt4,LOC107584486,LOC107712059,LOC107568197,LOC107721201,LOC107667314 non-coding downstream 8575 20007703 ~ 20007977 (+)
G46735 sirt4,LOC107712059,LOC107584486,LOC107568197,LOC107721201 non-coding downstream 8967 20008095 ~ 20008583 (+)
G46750 NA non-coding downstream 17437 20016565 ~ 20016863 (+)
G46751 NA non-coding downstream 19187 20018315 ~ 20018679 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other upstream 121500 19866559 ~ 19873535 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other upstream 148487 19843047 ~ 19846548 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other upstream 208738 19784177 ~ 19786297 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other upstream 401027 19566011 ~ 19594008 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other upstream 647406 19262584 ~ 19347629 (+)
G46742 NA other downstream 87963 20087091 ~ 20095641 (+)
LOC122346811 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494 other downstream 632842 20631970 ~ 20661207 (+)
LOC122347404 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494,LOC107712119 other downstream 721289 20720417 ~ 20749398 (+)
oxtra oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 775870 20774998 ~ 20786533 (+)
G47187 cpt1b,LOC107559523,LOC107710383,LOC107686536,LOC107671150,LOC107599889 other downstream 1776280 21775408 ~ 21777713 (+)

Expression


Co-expression Network