sirt4 (sirt4,LOC107584486,LOC107712059,LOC107568197,LOC107721201,LOC107667314)


Basic Information

Item Value
gene id sirt4
gene name sirt4,LOC107584486,LOC107712059,LOC107568197,LOC107721201,LOC107667314
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20006054 ~ 20009354 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241477.1
TGAAAGCGAGCCAAAAGCAAGGACCTTCTCTAAACTACATTTACCATCATGCACCTGTGCAACAACACGGAAGTTCTTGTTTTGATGGCCGCAGCAGCTACTTTACTAATGTTTACGAAATACAAGACTTTTAGTGTCGAGGGTTTTATAAATACAGGTTTGTAGATGCTGCTTTCATGGAGATCCGTGCCTCCTCGTGTGGCAGTAGGAAGATGTGCCTCTACAGTACAAGCTAGTGTGCAAAGATTTGTTCCTGCAAGTGGCTCAATTGACTCCAGTGCTTTGGAACAAGTCCAGGCCTTTGTGTCGCAGGCTTCTCGTCTGTTTGTGATAAGCGGTGCCGGACTCTCCACTGAATCTGGGATTCCAGACTACAGATCAGAAGGTGTGGGGCTGTATGCACGGACAGACAGGCGGCCGATGCAACACTCAGAGTTTGTGCGCAGTGCGAAATCTAGGCAACGATACTGGGCCCGGAACTACATGGGGTGGCCTCAGTTCTCCTCACACCAGCCGAATCCAGCGCACTTCGCATTACGAGACTGGGAGGAAAAGGGAAAGCTGCACTGGCTCGTCACTCAGAATGTAGATGCATTACACTCAAAGACTGGGCAGCAGAAACTAACTGAACTTCATGGATCTACACATAGGGTTGTGTGTTTGGACTGCGGGCAGCTGACTCCACGTGCTGAGCTTCAGAAACGTTTCGTAGCTCTTAACCCTGGCTGGGCAGCAAGTGCAGGCGCTGTGGCCCCAGATGGAGACGTGTTTCTGGAAGACGAGCAGGTGCTGAACTTCGTAGTACCTTCATGTGGTGCCTGCGGGGGTGTACTCAAACCTGAGGTGACGTTCTTTGGTGACGTAGTGAACCGGACTACAGTTCACTTCGTGTATAACAAGCTGGCTGAGTCTGATGCTGTGCTTGTGGCTGGATCTTCTCTCCAGGTTTTTTCAGGGTACCGCTTTCTCCTTGCTGCTAGTGAAAGAAAGCTTCCAATAGCCATCGTGAATATAGGACCCACTAGAGCTGACCACCTGACTGACATCAGGGTGAGTGCACGCTGTGGAGAAGTGCTGCCAGCCATCCAACTCTGAGAAATGAGAGTTATTCTGACCCTCAGTACTCGACTCATCACTGGAACATAGATTTGGTTTGGTTGTAGGCTGCTTGCATAATACAACTAATCTCTACCTCAAGTTAtggaattattataatatacatattcattAGCTAGAGTTTTAAGTGTGAATTCTTTCAGAGCATCTCAAGAATCAGTGTGGGAAACGGCATGGATCATGAATTCTTTTATTTACTCATAAATGTCTATTTATTAGTAAATTTACTTCAAAATGGTTATTGATGAATGGCTATTTAAATacgtatttttgaaaatgttaatgtactAGGATTGCATTggaacacattaaaaatatacattttaataatttgttctgCCTGGAAATATGTAATACACATTATTtcaatgcagttttacagaaaATCATGGTTTCTAATgtcttaatatatttgtgttttatagatGCATTGTAAATTTATAGATTCATAGAGCAGTTTAGAACTAGccaacaatatattttacattttcaacaatTTTTCTCAAGCAGTTGAAATCTGTATTCACTTTACTTGAGTACAATGTATATAAGatattaaaagattttgttttttggattaaAGGGAAACCTTGGAGTAAAAA

Function

symbol description
sirt4 Predicted to enable several functions, including NAD+ binding activity; acyltransferase activity, transferring groups other than amino-acyl groups; and zinc ion binding activity. Predicted to be involved in protein ADP-ribosylation and protein deacetylation. Predicted to be located in mitochondrial matrix. Is expressed in liver and retina. Orthologous to human SIRT4 (sirtuin 4).

NR:

description
NAD-dependent protein lipoamidase sirtuin-4, mitochondrial

GO:

id name namespace
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11414 SIRT4, SIR2L4; NAD+-dependent protein deacetylase sirtuin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241477.1 True 1718 mRNA 0.43 4 20006054 20009354

Neighbor

gene id symbol gene type direction distance location
rft1 rft1,LOC107584424,LOC107673548,LOC107721169,LOC107712099,LOC107568194 coding downstream 1369 20001100 ~ 20004685 (-)
eefsec eefsec,LOC107584423,LOC107667374,LOC107568193 coding downstream 11382 19988919 ~ 19994672 (-)
LOC122347402 LOC107673562,LOC107712070,LOC107584441,LOC105017189 coding downstream 39630 19965403 ~ 19966424 (-)
arpc4 arpc4,LOC107721188,LOC103358720,LOC107568180,LOC100696600,LOC103386159 coding downstream 41233 19961196 ~ 19964821 (-)
LOC122347206 wu:fd14a01,LOC107575389,LOC108443910,LOC108254796,LOC107571573,LOC107705004 coding downstream 46397 19949312 ~ 19959657 (-)
zgc:172271 zgc:172271,LOC107568196,LOC107721198,LOC107667401,LOC108440373,LOC105889207 coding upstream 160 20009514 ~ 20016235 (-)
sfi1 LOC107712061,LOC107568189,LOC107667358,LOC107721191 coding upstream 7192 20016546 ~ 20025871 (-)
slc2a11a slc2a11a,LOC107712104,LOC107673621,LOC107584427,LOC107667316,LOC102307538 coding upstream 41650 20051004 ~ 20056755 (-)
hdhd3 hdhd3,LOC107712106,LOC107584439,LOC107673581,LOC107667329 coding upstream 59516 20068870 ~ 20070207 (-)
trub2 LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444 coding upstream 61556 20070910 ~ 20073497 (-)
G46803 NA non-coding downstream 37594 19968246 ~ 19968460 (-)
LOC122347207 NA non-coding downstream 125466 19877312 ~ 19880588 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 168007 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 203788 19801243 ~ 19802266 (-)
G46658 NA non-coding downstream 213726 19791642 ~ 19792328 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 45512 20054866 ~ 20115259 (-)
G46836 NA non-coding upstream 118594 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 140193 20149547 ~ 20152787 (-)
G46842 NA non-coding upstream 164184 20173538 ~ 20174291 (-)
LOC122347561 NA non-coding upstream 230448 20239802 ~ 20240436 (-)
mustn1a mustn1a other downstream 5416 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 49324 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 158622 19843044 ~ 19847432 (-)
tomm6 NA other downstream 163060 19841479 ~ 19842994 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 450112 19553317 ~ 19555942 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 86670 20096024 ~ 20102459 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 152086 20161440 ~ 20166279 (-)
G46926 NA other upstream 519825 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1339265 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2730618 22739972 ~ 22750947 (-)

Expression


Co-expression Network