G25640


Basic Information

Item Value
gene id G25640
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2016257 ~ 2018609 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU28935
ATGAATATGCTGTTTATTCAAATTGCTTTCAAATTAGAAATTTGACTTTACAATTCTTAGCCAGCATTATATGACAGTGACATTCAAAGGTTTTCTCTTAATGCAGGATATTTAATGACATCCTGTCAAGGTAAACATTTTATTACAGCACCACAGTAAAACAGGCACATCCTTGATTTCTTTCTTTACAAGAAAGCTAGTTTTGTTTATACATGTACCTGTTTTCTTATAAAACATTTACTCCTGACTGATTGCAGTTATGTTTGGTGGCAATCTCAGAATTCAACAGGACAAGTCTGGAGACCTAAACAAGTGGGACTTAATCTTTTCTATACGGATTGGTTCATGAAATGGGAACAAGTTAGAAATGTTTCTTTTTTCCTGGACAGATTGGGACAAGAAGAATTGGGTCTGAAAGAATGGATGTTTTTTCTGGCACTACTGTTGCATCTACTGCTGCATCTACTGCTGCTACTTCTGGTGCAGAAACCTCCCTCTTTACAACAGGAGCTTCCTTTGGCACAACCACTACCTCAGCTGATTCAACAGATTCTGCAGAGATCAGGCCGCTTGCCGCAGGGTCATGAAGTGCTGTTAGCTTGTGATGTCTGAGGCCATGAATGGTGGGGTTGTGGTGAGGTCCAAAGGTGTGTGCATGCAGAAGTTGTTGGACTTGCACTGTGGCGTTGCTTGCTGGGTCCACAGCTTGGCTCTATCTGGGCTGAAGATTTTGCAGTCAACATCATTCAGATTGGCAGAACCTTCAGCTAGACAGAAGCCATGAATCTAAAAATAGTCACAAATATGGATTAGACACTTTGAAGTCAACATGAAAGACTGTTCAACCCATTTTGCTTCTGTAATCTGATGTGATTTCTGAGCAAAACAG
>TU28936
ATGAATATGCTGTTTATTCAAATTGCTTTCAAATTAGAAATTTGACTTTACAATTCTTAGCCAGCATTATATGACAGTGACATTCAAAGGTTTTCTCTTAATGCAGGATATTTAATGACATCCTGTCAAGGTAAACATTTTATTACAGCACCACAGTAAAACAGGCACATCCTTGATTTCTTTCTTTACAAGAAAGCTAGTTTTGTTTATACATGTACCTGTTTTCTTATAAAACATTTACTCCTGACTGATTGCAGTTATGTTTGGTGGCAATCTCAGAATTCAACAGGACAAGTCTGGAGACCTAAACAAGTGGGACTTAATCTTTTCTATACGGATTGGTTCATGAAATGGGAACAAGTTAGAAATGTTTCTTTTTTCCTGGACAGATTGGGACAAGAAGAATTGGGTCTGAAAGAATGGATGTTTTTTCTGGCACTACTGTTGCATCTACTGCTGCATCTACTGCTGCTACTTCTGGTGCAGAAACCTCCCTCTTTACAACAGGAGCTTCCTTTGGCACAACCACTACCTCAGCTGATTCAACAGATTCTGCAGAGATCAGGCCGCTTGCCGCAGGGTCATGAAGTGCTGTTAGCTTGTGATGTCTGAGGCCATGAATGGTGGGGTTGTGGTGAGGTCCAAAGGTGTGTGCATGCAGAAGTTGTTGGACTTGCACTGTGGCGTTGCTTGCTGGGTCCACAGCTTGGCTCTATTGGGCTGAAGATTTTGCAGTCAACATCATTCAGATTGGCAGAACCTTCAGCTAGACAGAAGCCATGAATCTAAAAATAGTCACAAATATGGATTAGACACTTTGAAGTCAACATGAAAGACTGTTCAACCCATTTTGCTTCTGTAATCTGATGTGATTTCTGAGCAAAACAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU28935 False 889 lncRNA 0.45 2 2016257 2018609
TU28936 True 888 lncRNA 0.39 2 2016257 2018609

Neighbor

gene id symbol gene type direction distance location
CI01000004_01987895_01997457 NA coding downstream 18800 1986588 ~ 1997457 (-)
CI01000004_01946043_01954044 PCYT1A, PCYT1AA coding downstream 59488 1945784 ~ 1956769 (-)
CI01000004_01923895_01931254 ANXA13, ANXA13L coding downstream 85003 1923152 ~ 1931254 (-)
CI01000004_01876658_01882471 NA coding downstream 133786 1876658 ~ 1882471 (-)
CI01000004_01874467_01874928 TSEN15 coding downstream 141054 1874211 ~ 1875203 (-)
CI01000004_02019772_02021213 NA coding upstream 1030 2019639 ~ 2021213 (-)
CI01000004_02027672_02032165 PFN2, PFN2L coding upstream 8816 2027425 ~ 2032165 (-)
CI01000004_02066165_02067630 NA coding upstream 47556 2066165 ~ 2067898 (-)
CI01000004_02074726_02085013 NMUR1B coding upstream 55876 2074485 ~ 2085104 (-)
CI01000004_02137991_02139934 NA coding upstream 118757 2137366 ~ 2140890 (-)
G25642 NA non-coding downstream 72146 1937199 ~ 1944111 (-)
G25744 NA non-coding downstream 105734 1910290 ~ 1910523 (-)
G25666 NA non-coding downstream 108716 1905313 ~ 1907541 (-)
G25661 NA non-coding downstream 258936 1755538 ~ 1757321 (-)
G25712 NA non-coding downstream 262797 1753239 ~ 1753460 (-)
G25676 NA non-coding upstream 55124 2073733 ~ 2074026 (-)
G25657 NA non-coding upstream 96845 2115454 ~ 2123244 (-)
G25660 NA non-coding upstream 175798 2194407 ~ 2195234 (-)
G25648 NA non-coding upstream 219420 2238029 ~ 2240154 (-)
CI01000004_01773383_01774888 INSL5B other downstream 241316 1772928 ~ 1774942 (-)
G26788 NA other upstream 1255824 3267683 ~ 3275721 (-)
G27746 NA other upstream 3159618 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 3601774 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 4516218 6538904 ~ 6541252 (-)
G29388 NA other upstream 4612684 6631293 ~ 6631907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location