lrrc15 (lrrc15,LOC107711115,LOC107585214)


Basic Information

Item Value
gene id lrrc15
gene name lrrc15,LOC107711115,LOC107585214
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 17508356 ~ 17515931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241542.1
ACCAACTCATTTCCAAATAATGCGGTTCAGTATGTGAGAGCTTTTGTACAAAGCAGTGGAGTCAACGGTTGACTGTAAAGAGGATAACCAGAAAGACATGAGCAGGCAGAAAGGAATCTgacaaagaaaatattgaagCTGTTTAAAAGACTGGAAAAGCTTGCGTGCAACTGGGAGAGCAAAGCTTCGATATCTCTGACAAGTCATCTTCTAGTTGGAGGGAGTCCATGGATCTTCTCATAATTATCAGCATGTGTGCCATATACACCATTGCCTCGGCATGTCCAGAGAACTGCCTGTGCAAGGCAAGCAAAATCCTTTGCCAAGGCTTTATAATAAAAGAATTTCCACTCTCCATCCTACCGACCACTGAAACCATGTTTATCTCCAACACCAGCATAGAATCATTAAAACCGGCTGATTTTGAGACTTTCGCAGCGAGCCTCACCGTCTTTGTAGCCAAGGATTCAAGAATAGCTGTGATAGAACCTCATACATTTGACCAAACCAGAAATCTCGTTGCCTTAGGTTTCAGTGGGACGATGCTAACCTCTCTGCCACAGGATCTGtttgaaaatcaaaaagcaTTATCAACTCTAACGCTGAGTAACAACAAACTAGAAGTTCTCCAACCATCTCTTCTGACTCCTCTTGTAAATTTGACCAAATTAGACCTAAGCAAAAACCGTTTAACCTCTCTGCCAGCAGATGCTTTTCGGGGTTTAGAAAAGCTGGAACAGCTCATGTTGCAGAGAAATGCAATCAGACAGCTTTACAGCAATGCTTTTCAAGGACTCAGTCATCTCAAACACCTGTTTCTGCAGCAAAATCATTTAACAGATATACCAGCAGGCATCTTCGACGACCTGGTAAGCCTTGAGATATTGCATCTTCAAGACAATACTATCACTCAGCTACCAGCAAATCTCTTCTCAAACTTGCCAAAGCTTAAGAAACTCTACCTCTCCAACAACAGGTTATCATTGCTTCCCAGTGCAATCTTTCTGAATCTTCCCAGCCTTACTCATATTTCACTGTATGAGAACCAACTCAGTAGGTTAATGCCTGAGACTTTTGGTCCAATGGCCCTCCAGGAGCTCTGGTTATATGACAATCTGTTAACCCACCTGGAGGATAATGTGTTTAACAACTTAACTGAGATTCGTCTTTTGGTGCTTAGTAGAAACCGGATTCAGCACATTTCTCCAGGTGCTTTCAATGGCTTAATGGAACTAGAGGAGATCTCTCTTCACACTAATCGACTCACTAGTATTCAGGCAGGGATCTTTAAGGGTCTTCCAAAGTTGACTAACATATCTATAGAGAACAATCAAATACAGCGCATTCCCATTAAACTCTTAGATGGTGTGTCCCATTTACATCTTCTGGAGCTTCAAAACAATTCCCTACCAAACTTGCAGAAAGAATTTCTAGACTCTTTGTCCATAGTCGATAATATTATGGTTCATCAAAATCCTTGGAGGTGTGACCATGACATAATACCTTTTAGGGATTGGCTTGGACAGTATCCAGAGAAAGTGAAGAACCTTACTTCTCTGATGTGCTATGCTCCTCCGGCCCTGAACAGTAGAAATATAAGAGATCTGAGGGAGGATGACGTCATGGTCAACCAAACAGCAACTGCAACAACGGTTGATATTTCTTCAGAAAGTACACAGGCATACAGTGAACCGACAGAAAGACATTCACCACACACTTCCCCAACCAAAACATCAGACTCTACAACAGTCTCAGAAGAGATAGAGGACACAAGCGGAGGTAAAACTGTGGGACAAGGTTTGTCCAAAGACAAACTCTTTATCATTCTAGCCATTGTCTGTACTGCTGTCATTGTCGGTATCATTGCCTGTGTGTTGTGGAGGAGGAATAAGCGAGGAAGTCAAGACTTGGACCgtcaaagaaaaaggaaaacaaactcAGTTatctaacatttatatatatatatgtttttttttaattcctctTTTAGCAGTTTTCAGTAGGTTTATGAAgagctttgttttttatttggcgaattcattttaacaaatgtttgttatggatattttcttctttttttttagtttttgatgtacaatgaatttaaaaaaattagataTCATTTGATGATCATAGCTCATGAACgctaacaaacaaatatactgtattttccATTCTTGCCACTGTCAATGGTTATACACTTTCTGCAGTTCAGGAGTAAACATGTTTTTCCTCatagaaaaaacacttttatatagTAAGCAAGacattgtatattaaaaataatctacAGACACTCAAGGTTTTGGTTTTGGTTCAGATTTGGTATTTTCAAtgcttattttatgttttgttttttttttttcatcttttttatctACATGAATACATCTGCATATTTTCCATTCAGTGTATCTAATTCTGGAATTAACAATATAACATCAAGCGGCTGTCAATTAATttagttctttaaaatatttttgtttgtaaattacTGTAAGatgtttatgtacattttaccttttaaaaaactCATATACGCAggaaataaacaagaaatatgTTCAGCCTAAACCTGCTCACAAATGTAGTATgcaaatgagataaaaaaaatactagaaaataattaattgaactgagaaaaaaaaaactaaatatgtgtACATTGTGAAACTCTTTAAAAGTGAGTTTGCAGTTTTTTATCTctctttaaacagaaaacaaactgtCCACACCCTTTCTGATGCCTTACGCACATGCAGTATGATAATAGCAGGATAGAGTCATTATAACAAGAGGACTTTGAAAAACACTTTCAACACTCAAACTGGGAAATAATAAACTGCAAAGCCTTCCTGGTGATGTTTTTGATATTCTTCCAAAAAGCAGTAAACTGTACCTGAACAAAAACATATGGCGGTGTGACTGTAACCTGCGACCATTCTTTGACTGGATGAAGAACAATGAGGACAAGATTAAATCAAAGCCACCAGAAGTTTGTGAGTCTCC

Function

symbol description
lrrc15 Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; hematopoietic system; ventral mesoderm; and yolk syncytial layer. Orthologous to human LRRC15 (leucine rich repeat containing 15).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241542.1 True 3009 mRNA 0.38 3 17508356 17515931

Neighbor

gene id symbol gene type direction distance location
rhcgl1 rhcgl1,LOC107722672,LOC107582811,LOC107685316,LOC107711010,LOC107667994,LOC107585195 coding upstream 18726 17485404 ~ 17489630 (+)
rgs4 rgs4,LOC107684221,LOC107711032,LOC107732436,LOC107551023,LOC107564089,LOC107685323 coding upstream 726223 16779272 ~ 16782133 (+)
uhmk1 uhmk1,LOC107692420,LOC107684193 coding upstream 840283 16660355 ~ 16668073 (+)
il12rb2 LOC107684120,LOC107724137,LOC107551010 coding upstream 904196 16593238 ~ 16604160 (+)
il23r LOC107724136,LOC107684101,LOC107692414 coding upstream 916612 16580538 ~ 16591744 (+)
lnp1 LOC107585171,LOC107673618,LOC107711110,LOC107582738,LOC107685315,LOC107722679 coding downstream 263231 17779162 ~ 17786165 (+)
tmem45a tmem45a,LOC107673617,LOC107585212,LOC107582844,LOC107711111,LOC107685333,LOC107722675 coding downstream 270568 17786499 ~ 17791846 (+)
sft2d2a zgc:110788,LOC107711028,LOC107726515,LOC107673477,LOC107585211,LOC108440097,LOC107580362 coding downstream 276387 17792318 ~ 17794634 (+)
chd1l chd1l,LOC107711109,LOC107726512,LOC107585192 coding downstream 279065 17794996 ~ 17809179 (+)
traf3ip2l LOC107585170,LOC107673545,LOC107711107,LOC107726519,LOC107582737 coding downstream 293330 17809261 ~ 17818232 (+)
G45903 NA non-coding upstream 268378 17237590 ~ 17239978 (+)
G45896 NA non-coding upstream 320552 17187418 ~ 17187804 (+)
LOC122346379 NA non-coding upstream 546665 16838389 ~ 16961691 (+)
G45826 NA non-coding upstream 742069 16766065 ~ 16766287 (+)
G45817 nos1ap,LOC107594625 non-coding upstream 817295 16682741 ~ 16691061 (+)
G45922 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 non-coding downstream 37586 17553517 ~ 17669007 (+)
G45962 LOC107585173,LOC107582739,LOC107711112 non-coding downstream 256223 17772154 ~ 17772733 (+)
G46020 NA non-coding downstream 428795 17944726 ~ 17995069 (+)
G46024 NA non-coding downstream 499309 18015240 ~ 18018835 (+)
G46018 NA non-coding downstream 511843 18027774 ~ 18046687 (+)
G45894 NA other upstream 321048 17186708 ~ 17187308 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 1941688 15564981 ~ 15566668 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 2048970 15358861 ~ 15459386 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 2264076 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 3528070 13972173 ~ 13980286 (+)
G46022 NA other downstream 479260 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 640724 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 1061247 18577178 ~ 18616958 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 1746653 19262584 ~ 19347629 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 2050080 19566011 ~ 19594008 (+)

Expression


Co-expression Network