atp1b1a


Basic Information

Item Value
gene id atp1b1a
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13598539 ~ 13607514 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241553.1
TACAAGCAAAGGTACCGGGTACGACTTTGTCCTTTTTTACAACATTTGGGAAGGGGACGACATCGCTGTGAAGTCCGTAAGGCCCGCTCAAACACCACCAAAAAGGGAACTAAATACCGAAAATGTCTGCAAATAAAGACGGCGACGGTGGATGGAAGAGCTTTATCTGGAATTCTGAGAAGAAGGAATTTTTAGGACGCTCCGGCTGCAGTTGGTTGAAAATCTTCATCTTCTACGTAATCTTCTATGGCTGCTTGGCTGGAATTTTCATTGGCACCATCCAGGCCATGCTCCTGACTCTCAGCAACTACAAGCCCAAATACCAGGACAGGGTTGCACCCCCAGGCTTATCACACACCCCGCGCCCGGAAAAGGCCGAGATCACCTACTCCATCACGGAAGGGAATTACCAGAAACATGTGGACGAGATCAAGGCCTTTCTGATGCAATACAACAATGAAAAACAGGGTGATAACAACAATTTCGAAGACTGCGGAGACAAACCTAAAAACTATATGGACCGCGGAGAAGTGGAGAGCAATGACGGCGTGAGGAAGGCCTGCCGCTTCCACAGAACCTTGCTGAAGGAGTGCTCAGGATTAGAACCCAACAATGAGGATTTCGGCTTCAAAGAAGGCAAACCCTGCATTATCATTAAACTAAATAGGATCGTGAACTTCAGGCCACAGCCTCCAGCGAATGAGAGCATCCCTGAGTTGATCCGCCCTAACTTTCAAGACCATCTGATCCCAATCCACTGCACAAACAAGAGAGAAGAGGACGCAGAACATCTTGGACCGATCGAGTACTTCGGGTTGGGGGCTGGCTTCCCCCTCCAGTATTACCCTTACTACGGAAAGCTGCTACAGCCCCAGTACCTCCAGCCTCTGGTGGCCGTCAAGTTCCACAACATCACTAAAGATTTCGAAATGCGCATCGAGTGTAAAGTATTCGGACAGAACATCGATTACAGCGAGAAGGACCGTTCTCAGGGACGTTTTGACATCAAAATCACCATCAACTCATGACCTTAGCTATGAAAATAGCACTTTTATTCTGCCCATTTCAAAACAGTAATTTCAGATGAATAAACAAAGACAAGTACAAATTCAATTGGAAAAACAACTACGACAACTAGTCTTGAACAAAGTTTCATAACATACGGGACCTACACTTAATCTGAACGCTTTACACTAGCTTTTCTCTGCATGTCTAGGGTTAGAATGTAAATTACAGGAAGAGTAGCAATAGAGAAGTATTTATTCTACTGTAAATGCGAATATTCCGTGAGCCATGGGACGttcatttattactgtaaattaaaattcCACTACTGATGTAGCGAGCAGTGTTTCTGTCCCCTAAGTATTTCTGCCTAGTGTGGtctctttatattttatggAGTGTGCAGTGCAGTAGTCACATATGATGGTCCTTTCCAAGCCATGTGGTTATTTCTGTTGTCTTATGTGAGAAAGCCTTAGCGGtccaaggtgtgtgtgtgtgtgtgtgtgtgagagagagagagtttgagtGTGAATGTGCATATTCGTCTacttaaaaactgaaaatactgGCATGGTACGCTCTGAACTCcccaggtctgtgtgtgtgtgtaagtgactGCACTCCGTTCAaatcttctttctttccttttctttccatCTTTTCCATTGATTGCGGGGaatatgtttttacatcaccttttgactttttatttgatCGTCTTGCAATTTGGGAAACTGGGGCTAATGACAATTCTGTGTAaggcttttattttcctttactATTAAGTGTAGAACTGTGTGTCTAGTCTGGAGGACTGAAGTGGCCAGTGGTCACCATGGCAACTcagtgcatttctttttttctttttttttgttctggaGACATCACATGATGTGGTGTTACTTTCTAATGAATGTTTTAGCCATTTTCATGGTGGaagaattttatatttatgcagttgtacaatttttttcagCAGGAGAAAGTGTAATGTATGAATCCAAAAACCAAAGTCACTGGTCAAAGGTTAGAAACCTATCAGATGCAAAGCAGTACCCCATGTAATaggatattttgttttgttgtttaaagtTCTTAAAAGTCATTGTTGGACATCAGAACACTTGTCAAGAGTTGCATTTGCTcttgtaatgttatttaaatctgGGTAAGACCTAAGAAGAAATAAATGGACAGACAACTGA

Function

NR:

description
sodium/potassium-transporting ATPase subunit beta-233-like

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005890 sodium cellular_component

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241553.1 True 2213 mRNA 0.42 6 13598539 13607514

Neighbor

gene id symbol gene type direction distance location
rpl5b rpl5b,rpl5,LOC107659024,LOC107590646,LOC107732018,LOC107566486,LOC107692344,LOC103368809 coding upstream 55972 13536511 ~ 13542567 (+)
LOC122347353 LOC107731845,LOC107659022,LOC107692422 coding upstream 126606 13469404 ~ 13471933 (+)
tp63 tp63,LOC107574491,LOC107590651,LOC107659018,LOC107752631,LOC107696778 coding upstream 207888 13350521 ~ 13390651 (+)
tprg1 tprg1,LOC107590652,LOC107751286,LOC107684336,LOC107552257,LOC107696755,LOC107752662 coding upstream 264965 13314057 ~ 13333574 (+)
LOC122346939 lpp,LOC107684332,LOC107590653,LOC107717931,LOC107696776,LOC107752632,LOC107552245,LOC108427685 coding upstream 319359 13119195 ~ 13279180 (+)
zgc:172121 zgc:172121,LOC107659029,LOC107692348,LOC107732016,LOC107590642,LOC107731828 coding downstream 31480 13638994 ~ 13644273 (+)
si:ch211-201h21.5 si:ch211-201h21.5,LOC107659008,LOC107731846,LOC107590672 coding downstream 44882 13652396 ~ 13655156 (+)
actl6a actl6a,LOC107659031 coding downstream 76915 13684429 ~ 13690950 (+)
ndufb5 LOC107659010,LOC107709185,LOC107590679,LOC107578042 coding downstream 85863 13693377 ~ 13696789 (+)
usp13 usp13,LOC107659032 coding downstream 90278 13697792 ~ 13722434 (+)
LOC122346508 NA non-coding upstream 3938 13589885 ~ 13594601 (+)
G44899 NA non-coding upstream 180699 13417558 ~ 13417840 (+)
G44898 NA non-coding upstream 181567 13416759 ~ 13416972 (+)
G44890 NA non-coding upstream 198991 13399022 ~ 13399548 (+)
G44886 NA non-coding upstream 240551 13357403 ~ 13357988 (+)
G44997 bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 non-coding downstream 42601 13650115 ~ 13650883 (+)
LOC122346715 NA non-coding downstream 48678 13656192 ~ 13657766 (+)
G44998 LOC102783117 non-coding downstream 54298 13661812 ~ 13662097 (+)
G45056 NA non-coding downstream 229093 13836607 ~ 13836819 (+)
G45070 NA non-coding downstream 252741 13860255 ~ 13860609 (+)
G44887 NA other upstream 188627 13394229 ~ 13409912 (+)
G44645 NA other upstream 489173 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 516420 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 792839 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 1071582 12521773 ~ 12526957 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 364659 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1628651 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1751347 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1957467 15564981 ~ 15566668 (+)
G45894 NA other downstream 3579194 17186708 ~ 17187308 (+)

Expression


Co-expression Network