LOC122346727 (cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162)


Basic Information

Item Value
gene id LOC122346727
gene name cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18015238 ~ 18024042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241575.1
TAAACCGCACAGATAGTGATTGGCGTAGAAGGGTTTTGTAGCGACTACCCTCctgtttaatgtaaaacatttacagtaagtGAGAGCTATTCACTCTTCTGTGATCTCAAGGACCCGGTAATCTCATCGTCAGTCACATCCGGAGCACGCATGGCTTCACGAAGGCAGAAGGACAGCTCAGACGGCTACCAGCCGCTCTTCAAATCATTCGCTACAGATGCGATCCACGTCGGTTCAGAGCCGGAGCAGTGGAACTCTAGGGCCGTAGTGCCTCCTATTTCACTCTCCACTACCTTTAAACAACACGAACCGGGGAAACACGCGGGTTTTGAGTACAGCAGGAGCGGAAATCCCACAAGAAACTGTCTGGAGAGAGCGGTTGCTGCTTTGGACGGTGCACAACACTGTCTCGCTGTTGCCTCTGGTTTGGCTGCAACTTTGACCATCACGCATCTTTTTAAGGCTGGAGATGGAATTTTGTGCATGAATGATGTTTATGGAGGAACTAACCggtatttcagaaaaatagctGCAGAAGTTGGCTTTGATATCTCTTTTGCCGACCTCACAAAGCTAGAGGAGATAAAAGCAGCTCTGAAACCAAATACAAAGATGGTGTGGATTGAAACGCCCACAAACCCTACAATGAAGGTTGTGGACATCCAGGGCTGTGCTGATATTGTCCATGGGCACAACAAGGATATAATTGTTGTTGTGGACAACACTTTCATGTCAGCCTACTTCCAGCGCCCCCTTGCACTTGGAGCAGACATCTGCATGTACTCTGCAACAAAGTACATGAATGGACACAGTGATGTTGTGATGGGACTGATTTCTCTCAACCGGGATGACATCTATGAACGACTAAAGTTTTTGCAGAATGCTCTTGGGGCTGTGCCTTCTCCATTTGACTGTTATATGTGCAACCGGGGTCTGAAGACGCTCCACGTGAGAATGAAGCAGCACTTCAGGAACGCAATGGCTGCGGCACAGTTTCTGGAGGCCGACCCAAGAGTGGACAGAGTCATCTTCCCAGGTCTTCCATCTCACCCTCAGCACGAGCTGACAAGGAGACAGTGCACGGGCTGTCCTGGGATGATCACTTTCTATATCAAAGGAAAACTGGAGCATGCCTCAACCTTCCTCAGCAGTCTGAAGctGTTTGCACTTGCTGAAAGTCTCGGTGGTTATGAGAGTCTAGCAGAGCACCCagcaATTATGACACATGCTTCAGTGTCTGAGGATGAGAGGAAAGAACTGGGCATCAGTGATACGCTCATTCGTTTGTCTGTGGGCCTGGAGGATGAGGAAGATATTATTGCAGACCTGGACCAAGCCCTTGCTGCTGCACACCCAAAAAAGTAAGAGGCTGATCAAGCTCAATCAAGAACAGTGGTACAACATCTGGACAAGACAAGTCTTCTGTGGCACATTTCTAATACTACTATGACAGTTATGCTTGAAAAACTTGATTTGCATTTGTCAGGGAACAACTATCCTCAAGAAACTCATTTGCCATCTTTTCTTTCAAATTACAGCAGATTTGCTGCTTTTGTGTTTCTACCTTTTTGTAATTATAGTTTGATAAGGTAGTTGGGTTATAAACATGTTCCactatttaaacttttaatacaGGAAAAAGCCAGGACTTCAAGGGAACTCCGATATCatgcaaatgaaaatttttatctttttataagGACTGTGATTCAAGTTAATTCGGCAAGAAGTGCAAGCAGCACAAAAGACACAGTTTACACAACGAATCTTTATTTTCTGCATCAAAGAAGCACAGTTACCTCGTAATGTTTCAAATCACTCTTTATTGATcagtttgtattttaaatactggATATTGGTTGGAGGCTTGAGCATTTTAAACTCTTAGAGGAATCGCATCTGATCTTTGTCTGTGCTACCAGACCCATTAAAAGCCATTTGTAATCTC

Function

symbol description
cth Predicted to enable cystathionine gamma-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in cysteine biosynthetic process via cystathionine and transsulfuration. Predicted to act upstream of or within cysteine biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and cystathioninuria. Orthologous to human CTH (cystathionine gamma-lyase).

NR:

description
PREDICTED: cystathionine gamma-lyase-like

GO:

id name namespace
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241575.1 True 1948 mRNA 0.45 12 18015238 18024042

Neighbor

gene id symbol gene type direction distance location
LOC122347583 LOC107711009 coding downstream 18499 17993970 ~ 17996739 (-)
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 345395 17668187 ~ 17669843 (-)
LOC122346427 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 459999 17553503 ~ 17555239 (-)
LOC122347243 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding downstream 790328 17217987 ~ 17224910 (-)
brinp3a.1 brinp3a.1,LOC107585174,LOC107711117,LOC107732447,LOC107685317,LOC107564080 coding downstream 1088870 16898685 ~ 16926368 (-)
LOC122346729 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding upstream 4012 18028054 ~ 18040353 (-)
LOC122346728 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding upstream 21611 18045653 ~ 18060885 (-)
nit2 nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305 coding upstream 55592 18079634 ~ 18083673 (-)
si:dkey-66a8.7 LOC107673611,LOC107711100,LOC107685304,LOC107582732,LOC107585166 coding upstream 64018 18088060 ~ 18090531 (-)
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding upstream 67073 18091115 ~ 18096535 (-)
G46000 NA non-coding downstream 192503 17822536 ~ 17822735 (-)
G45993 NA non-coding downstream 207123 17807621 ~ 17808115 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding downstream 496633 17514638 ~ 17518605 (-)
G45897 NA non-coding downstream 827444 17187456 ~ 17187794 (-)
G45770 NA non-coding downstream 1692433 16320413 ~ 16322805 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 16322 18040364 ~ 18044630 (-)
LOC122346732 nit2 non-coding upstream 38739 18062781 ~ 18066949 (-)
G46074 NA non-coding upstream 73026 18097068 ~ 18097490 (-)
G46092 NA non-coding upstream 93314 18117356 ~ 18117582 (-)
G46140 NA non-coding upstream 225892 18249934 ~ 18250635 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 241131 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 601099 17382327 ~ 17414139 (-)
G45910 NA other downstream 706760 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 768852 17235790 ~ 17246386 (-)
G45895 NA other downstream 827920 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 620264 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 682581 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 690132 18714174 ~ 18717488 (-)
G46478 NA other upstream 1031104 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 1091019 19115061 ~ 19149731 (-)

Expression


Co-expression Network