G25329


Basic Information

Item Value
gene id G25329
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2083057 ~ 2085707 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU28564
CATTCCATGAAGCTCTCTACGCACTGTTCTTGAGCTAATCTGAAGGCCACACGAAGTTTGGAGGTCTGTAGCTATTGACTCTGCAGAAAGTTGATGACTTCTGCGCACTGTGTGCCTCAGCATGTGCTGACCCCGCTCTGTGATTTTACGTGGCCTTGTTGTTGTTCCCAATTGCTTCCACTTTGTTATGATACCACTAACAGTTGACCATGGAATATTTAGTAGTGAGGAAATTTCACGAATTGACTTATTGCACAGGTGGCAACCTATCACGGTACCACACTTGAATTCACTGAGCTCCTGAGAGTGACTCATTCTTTCACAAATGTTTGTAGAAGCAGTCTGCATGTCTAGGTGCTTGATTTTATACACCTGTGGCCATGGAAGTGATTGGAACACCTGAATTCAATGATTTGGAGGGGTGTCCCAGTACATTTGGCAATATAGTGTACATAGAATGGCTTGAGGGTAAGTAAATCTTGGGGTCATTTTCATTTTAAAGTGAACTGATTCTTTAATTTACATGGCTTTTTCAGGTCTATAAATCACACTTTTAAACTTTATGCTACCTCATATATTCAGGTTTTCCAAGACTGTTGAAACTCTGGTTCTTCAAAATAGTTTTTAAATTAAATTTAAATAACAAATATCATGGATTTAGCTTATTTTAATGTTTGTTTTGTCTTATTTTACATCATTTTAAGTTATCTTGATGCGCCTTGGAAGTTTGCTGATGCCCCTTGTAGGTCCTGGCCTCCAGGTTGAGAATAAATGATTATACCAACAAAACTAAATTTAGGAGTTATATAAGGTATATAAGTAGCTCCTTAAGGTAACAATTACAGGTTTTCACTTTTTACAGTGTTCAATCCTTTCTTACTTCATCCCAAAACTTTTCATTATCCAAACAGGCCTTGATATATAAAAACCTAATTAAAGTTCCATAGATTTTTTCCACATTAAATATCCTTTTTCGTTTGGTAATATGTCACATTATGAAAACTGTGAATGGTGTTTCATGTTGACTTTAACTGTTAACCCTTATTACTGGCATACAGATCCCAACAGCAGGGGTAGCACTGGAACGGGACTCACAGAGCATTTTTGTGACTTGCCGATGACGTGCCCTCTGATTCACCCCACCCTGATTGATCCCAGTCCTAGAATCAAAACATTCCCTTTCCCGATGCAGCTGCAGGCCGATCAGCACATACAGCACACTGATAGTCAACATTGGCAATATGAAGAACAGCAGTGCTGTCACTTGCACCAGCGTGTTGTAGATCCACCTATCGTGCACCATGGTACACACACTCGAATCAGGGAAAGTGAGTCCAAAATGGGGCTTTAGCGTCTGCACGCCATGCAGACTGGTATTGGGCAAGGCACACAACAGAGAGACAGCCCATAACACGAGGATAACACGCTTGGCATGATCATGCGTTGCCACATGTTTGGCGTGCAGAGGATGCACCACTGCTCTGTAGCGCTCTGCACTCAAAGCGGTCACGTTGAGCACAGAGGCAAAGCAGACAGTCTCGAACAGGCAGGTTTTGAAGTAGCAGCCAGCAACGCCAAACAGAAAAGGATAGTTGCTCCAGAGATCATAAAGCTCCAGAGGGAGACCGAGCAACAGCACGAGGAGGTCAGAAATGGCCAAGCTGAACAGATAGTAGTTTGTCGTTGTGCGCATTACACGGTGACGGGCGATGACAATACAAGTCAGACTGTTGCCCAGCACGCCAACTAGAAAGATGAGCAGGTAGATGACACACATAGGCAGAAAGAAGGGTGAACGTCTAGGGCCGAGGTGCTCCTCCAGGTAAGCGCTGCGGCTAAGACAAAGGTCTGACTGGTTCATTGTTCTGTTTTGACATTCTTCCTCTTTGGTGGAGCACCATGATGCATTCACAGCTGCGTAGAGGGAGTCTGGAGAGGAGCAGTTGAACTGGATCATTGGTTACCAGGAGGATTACCTGCAGAAGTTACAACAAAGATAGACAGGGTTAAAGGGGTTTTAATTATTATTCTATACTATAATAATTACTTATTCAAGTAAGATTTTTTAAAAGACATTAATACCTCTCTCTCTCTCTCTCTATATACATATTTATGTTATTAATACATTATTTATTATATATTATTAAAGAATTAGTTCACTTTCAATTGAAAATTACCCCAAACTTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTTTCTTCTTTCTGATAAACACAATCAGAGATATATTAATAAATATCCTAAAAAATATCAAGCTTCCGCCAAACAAGTTATGAAGAAACAAAACTGGCGTCGCGTCAGTTAAGTCTTTTCCGTAAGTTGACTAGGGAAGGCGTAGGACGTAGTGTAAGCTTTTTGAACTGTGAGAGGTGTTGCGCTTTCTTTCTAACTTGAATATGGAAGGCGGTCTGGCGGGAGATTGATATTTTACTTCATAACTTGTTAAATATGGATATATTTTTTTTTACACAAACACATCGATTCGCTTCAGAAGGCCTTTATTAACTCCCCAGAGCCGTGTGGAGTACACGTTTATGATGGACTGATGTGGATGGAGGCACTTTCTTCAGCTCATACTCGTTGGTATCGCTGACTGCCATTATAAAGCTCGGATGCGTCAGGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU28564 True 2651 TUCP 0.44 1 2083057 2085707
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000004_02068075_02072887 NA coding upstream 8996 2067958 ~ 2074081 (+)
CI01000004_02033826_02057420 TSC22D2 coding upstream 25404 2033003 ~ 2057653 (+)
CI01000004_02014703_02018248 NA coding upstream 64591 2014600 ~ 2018466 (+)
CI01000004_02004004_02012588 NA coding upstream 69643 2002871 ~ 2013414 (+)
CI01000004_01999847_02001406 NA coding upstream 80278 1999847 ~ 2002779 (+)
CI01000004_02116310_02120268 VPS4B coding downstream 30230 2115937 ~ 2120360 (+)
CI01000004_02126757_02136937 KDSR coding downstream 40759 2126466 ~ 2137348 (+)
CI01000004_02143355_02186281 BCL2B coding downstream 56969 2142676 ~ 2186771 (+)
CI01000004_02528689_02568243 NA coding downstream 442982 2528689 ~ 2569227 (+)
CI01000004_02671199_02727898 GPR158B coding downstream 585492 2671199 ~ 2728328 (+)
G25332 NA non-coding upstream 1615 2074919 ~ 2081442 (+)
G25297 NA non-coding upstream 55265 1978730 ~ 2027792 (+)
CI01000004_01961480_01979407 DVL3A non-coding upstream 121998 1960055 ~ 1979465 (+)
G25324 NA non-coding upstream 125796 1956642 ~ 1957261 (+)
G25358 NA non-coding downstream 52 2085759 ~ 2122591 (+)
G25325 NA non-coding downstream 53211 2138918 ~ 2139139 (+)
G25301 NA non-coding downstream 53671 2139378 ~ 2140889 (+)
G25372 NA non-coding downstream 106482 2192189 ~ 2192405 (+)
G25308 NA non-coding downstream 108700 2194407 ~ 2195224 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 209699 1867166 ~ 1868986 (+)
G25187 NA other upstream 466587 1604542 ~ 1616470 (+)
CI01000004_01332533_01345585 SCP2 other upstream 734883 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1611211 467802 ~ 471846 (+)
G25882 NA other downstream 462368 2548075 ~ 2573049 (+)
G25992 NA other downstream 650829 2736536 ~ 2736768 (+)
CI01000004_02745885_02768971 NA other downstream 672749 2745885 ~ 2769135 (+)
G26245 NA other downstream 1423310 3509017 ~ 3522393 (+)
CI01000004_03550525_03552621 PTGER4C other downstream 1465341 3550329 ~ 3553423 (+)

Expression

G25329 Expression in PRJCA010000

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G25329 Expression in each Bioproject

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G25329 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Co-expression Network