LOC122346728 (cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733)


Basic Information

Item Value
gene id LOC122346728
gene name cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18045653 ~ 18060885 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241576.1
ATTGGCGTAGAAAGTTTTAGCTGGAGCAGACCCTCCGGTTTATTAAGAGACTACAGTAAGAGAGAGCTATTCACTCTTCTGTGATCTCAAGGACCCGGTAATCTCATCGTCAGTCACATCCGGAGCACGCATGGCTTCACGAAGGCAGAAGGACAGCTCAGACGGCTACCAGCCGCTCTTCAAATCATTCGCTACAGATGCGATCCACGTCGGTTCAGAGCCGGAGCAGTGGAACTCTAGGGCCGTAGTGCCTCCTATTTCACTCTCCACTACCTTTAAACAACACGAACCGGGGAAACACGCGGGTTTTAACTACAGCAGGTGTGGAAATCCCACAAGAAGCTGTCTGGAGAGAGCGGTTGCTGCTTTGGACGGTGCACAACACTGTTTCGCTGTTGCCTCTGGAACGGCTGCCATTTTGACCATCGCGCATCTTCTTAAGGCTGGAGATGAAATTCTGTGCATGAATGATGTTTATGGAGGAACAAATGAGTATTTCTCAAAAATAGCTGTGGAATTTGGCCTTGGTGTCTCTTTTGCTGATCTCACAAAACTAGAGGAGATAAAAGCAGCTCTGAAACCAAATACAAAGATGTTATGGATTGAAACACCCACAAACCCTACATTGAAGGTGGTGGACATCAAGGCCTGTTCTGATATTGTCCATACGCACAACAAGGATATAATTGTTGTTGTGGACAACACTTTCATGTCGCCCTATTTTCAGCGCCCCCTTGCACTTGGAGCAGATGTCTGCATGTACTCTGCAACAAAGTACATGAATGGACACAGTGATGTTGTGATGGGACTGATTTCTCTCAACCGTGATGATCTCAATGAACGACTGAAGTTTTTGCTGAGTGCTCTTGGGACTGTACCTTCTCCATTTGACTGTTATATGTGCCACCGGGGTCTGAAGACGCTCCACGTGAGAATGAAGCAGCACTTCAGGAACGCAATGGCTGCGGCACAGTTTCTGGAGGCCGACCCAAGAGTGGACAGAGTCATCTTCCCAGGTCTTCCATCTCACCCTCAGCACGAGCTGACAAGGAGACAGTGCTCAGGCTGTCCTGGGATGATCTCTTTCTACATCAAAGGAAAACTGGAGCATGCCTCAACCTTCCTCAGCAGTCTGAAGttGATTACGCTTGCTGATAGTCTCGGTGGTGTTGAGAGTCTAGCAGAGCACCCAGCAAGTATGACTCATGTTACCGTGCCTGAAAATGAGAGGAAAGAACTGGGCATCAGTGATACGCTCATTCGTTTGTCTGTGGGCCTGGAGGATGAGGAAGATATTATTGCAGACCTGGACCAAGCTCTCCGTGCTACGGAAGGTCCCATTGAGCAATAGAGTCTCTTCTTCCAGGCAGTCCTGGTCAAGATCAAAGATTTAGGATTTCTGCAGTAGATGGAATTTATTCTAAGGAAATCATGGCTTCCGTATTATTCTATAACCAAGgtgcataaaaaacaaaacacttttaacaTGCTCTGAATAAACCATAGGAACTCAAACGAATAATAGTAGTTGATCtagtaaatatgtaatttttatagtaatatgaTATGTCTCCGGTAGAAAGAAGTGAATGAAGTAGGAGGTTTGCCTCGCAGTGCCTTTgcaacaattaataaaatataatttttctttttttgatataAGCACCAATAGAGTCATACAAGACACAATTATGACTACGAACTAGCATTTGTTCCAAAAGCAATACACGattcaacttttttttggtaaggATGAATTTGTGTTCATGTATAACACAAGCTTAATCAAATACTGACAAATAAGGTTTTGTACGATTCTCTCTCCGGCTTCATATGGGAGGAAAGCTGACTAATGTGTACATTAAAAAGCCAACTTTGAGGAAAATAAGACGCTATACTGGGTTGGTGAACTTTGGCCCTGAAGAGCTGCggccctgcagagttttgcttcAACCTTAATCAAATACACCTGAACAAACTAATCAAGGTCTGAAGTGTTCCTACAAAGCTACTGGCAGCTGAGCTCTCCAGGACTACAGTTCACCTCCTCTGCTTTATACACAATCCTGGAGGCCCTCCCAACGCTGCATGTTTTCCATGTCTTAATCAAGCACACCTAATTCAGATCAGCTCATCATCCCAGAATACATTAGGTTCTGTCAGTGAAACAATTCAAAGCCATCTAGATTTAAGCCTCTGTAATAGCAGTTTATAAGGCCACACTGTGTAGTCATTTACAAAATAAGTAGTTTCCACAGTTTCacaattttaattgattaaattaatataacaatgtCACCTATTTCTTAATGttctatatgtatgtatttttttttgtctaataaaggctgaatttgattaattaaa

Function

symbol description
cth Predicted to enable cystathionine gamma-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in cysteine biosynthetic process via cystathionine and transsulfuration. Predicted to act upstream of or within cysteine biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and cystathioninuria. Orthologous to human CTH (cystathionine gamma-lyase).

NR:

description
PREDICTED: cystathionine gamma-lyase-like isoform X3

GO:

id name namespace
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241576.1 True 2367 mRNA 0.43 12 18045653 18060885

Neighbor

gene id symbol gene type direction distance location
LOC122346729 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding downstream 5300 18028054 ~ 18040353 (-)
LOC122346727 cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162 coding downstream 21611 18015238 ~ 18024042 (-)
LOC122347583 LOC107711009 coding downstream 48914 17993970 ~ 17996739 (-)
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 375810 17668187 ~ 17669843 (-)
LOC122346427 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 490414 17553503 ~ 17555239 (-)
nit2 nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305 coding upstream 18749 18079634 ~ 18083673 (-)
si:dkey-66a8.7 LOC107673611,LOC107711100,LOC107685304,LOC107582732,LOC107585166 coding upstream 27175 18088060 ~ 18090531 (-)
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding upstream 30230 18091115 ~ 18096535 (-)
jade3 LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568 coding upstream 38979 18099864 ~ 18109115 (-)
rp2 rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570 coding upstream 49761 18110646 ~ 18116377 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding downstream 1023 18040364 ~ 18044630 (-)
G46000 NA non-coding downstream 222918 17822536 ~ 17822735 (-)
G45993 NA non-coding downstream 237538 17807621 ~ 17808115 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding downstream 527048 17514638 ~ 17518605 (-)
G45897 NA non-coding downstream 857859 17187456 ~ 17187794 (-)
LOC122346732 nit2 non-coding upstream 1896 18062781 ~ 18066949 (-)
G46074 NA non-coding upstream 36183 18097068 ~ 18097490 (-)
G46092 NA non-coding upstream 56471 18117356 ~ 18117582 (-)
G46140 NA non-coding upstream 189049 18249934 ~ 18250635 (-)
G46160 NA non-coding upstream 271958 18332843 ~ 18333266 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 271546 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 631514 17382327 ~ 17414139 (-)
G45910 NA other downstream 737175 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 799267 17235790 ~ 17246386 (-)
G45895 NA other downstream 858335 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 583421 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 645738 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 653289 18714174 ~ 18717488 (-)
G46478 NA other upstream 994261 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 1054176 19115061 ~ 19149731 (-)

Expression


Co-expression Network