LOC122346729 (cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733)


Basic Information

Item Value
gene id LOC122346729
gene name cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18028054 ~ 18040353 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241577.1
ATGGCTTCACGAAGGCAGAAGGACAGCTCAGACGGCTACCAGCCGCTCTTCAAATCATTCGCTACAGATGCGATCCACGTCGGTTCAGAGCCGGAGCAGTGGAACTCTAGGGCCGTAGTGCCTCCTATTTCACTCTCCACTACCTTTAAACAACACGAACCGGGGAAACACGCGGGTTTTAGCTACAGCAGGTGTGGAAATCCCACAAGAAGCTGTCTGGAGAGAGCGGTTGCTGCTTTGGACGGTGCACAACACTGTTTTGCTCTTGCCTCTGGTATGGCTGCAACTTTGACCATCGCGCATCTTCTTAAGGCTGGAGATGAAATTCTGTGCATGAATGATGTTTATGGAGGAACAAATAAGTATTTCTCAAAAATAGCTGTGAAATTTGGCCTTGGTGTCTCTTTTGCTGATCTCACAAAGCTAGAGGAGATAAAAGCAGCTCTGAAACCAAATACAAAGATGTTATGGATTGAAACACCCACAAACCCTACATTGAAGGTGGTGGACATCAAGGCCTGTTCTGATATTGTCCATACGCACAACAAGGATATAATTGTTGTTGTGGACAACACTTTCATGTCGCCCTATTTTCAGCGCCCCCTTGCACTTGGAGCAGACGTCTGCATGTACTCTGCAACAAAGTACATGAATGGACACATTGATGTTGTGATGGGACTGATTTCTCTCAACCGTGATGATCTCAATGAACGACTGAAGTTTTTGCTGAGTGCTCTTGGGAGTGTACCTTCTCCATTTGACTGTTATATGTGCCACCGGGGTCTGAAGACGCTCCACGTGAGAATGAAGCAGCACTTCAGGAACGCAATGGCTGCGGCACAGTTTCTGGAGGCCGACCCAAGAGTGGACAGAGTCATCTTCCCAGGTCTTCCATCTCACCCTCAGCACGAGCTGACAAGGAGACAGTGCTCAGGCTGTCCTGGGATGATCTCTTTCTACATCAAAGGAAAACTGGAGCATGCCTCAACCTTCCTCAGCAGTCTGAAGttGATTACGCTTGCTGATAGTCTCGGTGGTGTTGAGAGTCTAGCAGGGCACCCAGCAATTATGACACATGCTTCATTGTCTGAGGATGAGAGGAAAGAACTGGGCATCAGTGATACGCTCATTCGTTTGTCTGTGGGCCTGGAGGATGAGGAAGATATTATTGCAGACCTGGACCAAGCTCTCCGTGCTACGGAAGGTCCCATTGAGCAATAGAGTCTCTTCTTCCAGGCAGTCCTGGTCAAGATCAAAGATTTAGGATTTCTGCAGTAGATGGAATTTATTCTAAGGAAATCATGGCTTCCGTATTATTCTATAACCAAGgtgcataaaaaacaaaacacttttaacaTGATCTGAATAAACCATAGGAACTCAAACGAATAATAGTAGTTGATCtagtaaatatgtaatttttatagtaatatgaGTCTCCGGTAGAAAGAAGTGAATGAAGTAGGAGGTTTGCCTCGCAGTGCCTTTgcaacaattaataaaatatatatatatattttttgatataaGCACCAATAGAGTCATACAAGACACAATTATGACTACGAACTAGCATTTGTTCCAAAAGCAATACACGattcaacttttttttggtaaggATGAATTTGTGTTCATGTATAACACAAGCTTAATCAAATACTGACAAATAAAGTTTTGTACGATTCTCTCTCCGGCTTCATATGGGAGGAAAGCTGACTAATGTGTACATTAAAAAGCCAACTTTGAGGAAAATAAGACGCTATACTGGGTTGGTGAACTTTGGCCCTGAAGAGCTGCggccctgcagagttttgcttcAACCTTAATCAAATACACCTGAACAAACTAATCAAGGTCTGAAGTGTTCCTACAAAGCTACTGGCAGCTGAGCTCTCCAGGACTACAGTTCACCTC

Function

symbol description
cth Predicted to enable cystathionine gamma-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in cysteine biosynthetic process via cystathionine and transsulfuration. Predicted to act upstream of or within cysteine biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and cystathioninuria. Orthologous to human CTH (cystathionine gamma-lyase).

NR:

description
PREDICTED: cystathionine gamma-lyase-like isoform X3

GO:

id name namespace
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241577.1 True 1914 mRNA 0.44 12 18028054 18040353

Neighbor

gene id symbol gene type direction distance location
LOC122346727 cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162 coding downstream 4012 18015238 ~ 18024042 (-)
LOC122347583 LOC107711009 coding downstream 31315 17993970 ~ 17996739 (-)
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 358211 17668187 ~ 17669843 (-)
LOC122346427 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 472815 17553503 ~ 17555239 (-)
LOC122347243 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding downstream 803144 17217987 ~ 17224910 (-)
LOC122346728 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding upstream 5300 18045653 ~ 18060885 (-)
nit2 nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305 coding upstream 39281 18079634 ~ 18083673 (-)
si:dkey-66a8.7 LOC107673611,LOC107711100,LOC107685304,LOC107582732,LOC107585166 coding upstream 47707 18088060 ~ 18090531 (-)
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding upstream 50762 18091115 ~ 18096535 (-)
jade3 LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568 coding upstream 59511 18099864 ~ 18109115 (-)
G46000 NA non-coding downstream 205319 17822536 ~ 17822735 (-)
G45993 NA non-coding downstream 219939 17807621 ~ 17808115 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding downstream 509449 17514638 ~ 17518605 (-)
G45897 NA non-coding downstream 840260 17187456 ~ 17187794 (-)
G45770 NA non-coding downstream 1705249 16320413 ~ 16322805 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 11 18040364 ~ 18044630 (-)
LOC122346732 nit2 non-coding upstream 22428 18062781 ~ 18066949 (-)
G46074 NA non-coding upstream 56715 18097068 ~ 18097490 (-)
G46092 NA non-coding upstream 77003 18117356 ~ 18117582 (-)
G46140 NA non-coding upstream 209581 18249934 ~ 18250635 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 253947 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 613915 17382327 ~ 17414139 (-)
G45910 NA other downstream 719576 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 781668 17235790 ~ 17246386 (-)
G45895 NA other downstream 840736 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 603953 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 666270 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 673821 18714174 ~ 18717488 (-)
G46478 NA other upstream 1014793 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 1074708 19115061 ~ 19149731 (-)

Expression


Co-expression Network