cfap52 (cfap52,LOC107757424,LOC107659863,LOC107703996)


Basic Information

Item Value
gene id cfap52
gene name cfap52,LOC107757424,LOC107659863,LOC107703996
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10509922 ~ 10516964 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241626.1
gttgtcCCATTGTTCACTTTATTTCTGGAATACGTTTGTCAAGACTTTTGAATAGAAGTTGTAAAGTATTAAGtttattgaatattaataaacaacgttaaaaactaaatcattaaataaaaaagagagcTTTACATCAGATGCaggtgaaattaaaaatgtctgtgGTATATAAAGTGGACCTTAAAAAAACGTGTAAAGGTGAGTAAACTACTTAGTAGTATTAAGCTGGTTACAGCTTATATTTTCCCATATATTTTGCAGTATTCCCACATAGGCTATTTTTGGCTGTCctctcaaaaacattatttaggaTAATTACACTATAAAGTAAAGTATAGCAGCTGAAAAGCTGTACTAAAACTCCTGGAAGACATTTATAGTTTAAAACTTACAGAAACAAAACGCTAAATTGAATTCGCTTTCTCAATAACCAAAAACAGAAAGTGGGTGTATGAACAGTTCAAATGAATCGACTCGCTGAAACGAACTCTCCCACGCTACTAAGCAACGAGTCTAAACACAGCGTGCTGCTGTTGCCTGGATACGCGTGTTTGGCTCTTTTCTAAATGTATTCGGAAGCTTAGCGTTGTATCGCAATGGCAGAAGACGCGCAAGAAGTCCCTCAGATCGCATTAGAGGCTGTTATTGGTTTTAATGGTCACGTGATTTCTGGACTCAAAGTGCATCCAGACAAAGAGCATCTCATTTATCCTCTTGGCTGCACTGTTATTATCAAAAGTTTGAGAAGTGGGAAACAAACTTTCCTCCATGGCCACACAAACAACGTCTCTTGcatttctgtgtccaaaagcgGACGCTATATTGCATCCGGACAGGTTACTTTCATGGGCTTTAAGGCTGATGTTATTATCTGGGACTATGAGAAGAAGGAGATTTATGCCCGTCTTGTGCTTCATAAAGCCAGAGTTGAAGATCTAAGCTTCTCCCCAAATGATAAGTATATGGTATCCTTGGGCGGACAGGATGATGGCAGCATCGTAGTGTGGAACATCGAGAGCAAGGAGGCTATATGTGGCAGTCCTGCTTCAGCACAGAGCGCTGGACACTGCCTCACCATTAAGTACACCAATCTGAATGATGAAATCTTCGTCTCTGCTGGAAAtgGAACTCTGCGTGTGTGGGAGCTAGATTTGCTCAACAGAAAGATCCGGCCCACAGAATGCCAGACTGGACAGCTCAAAAGAATTGTCAAATGTCTAGAGATCCCAGATGATGATAATTATTTCTACTGTGGAACTACTAGCGGAGATATTCTGAAAGTGAACCTGAAGACGAGGTTGCTCAACAGCTGCGGTCCTGTTAAACAAAAATTCAGCAAGGGAGTGAACACTCTTAAAGTCCTGAAGACTGGTGATATTTTAGTTGGATCGGGGGACGGGATGTTGTCGTTGTGTTCAGGAGGGAATTTCAAAACCATTAAGAGTGTTCAGTTGGAGGGAGGGGTGACATCGGTGACCCTGCGTGGAGACGGCCATCAGTTTTATGTCGGGACAGAAGCTGCACAGATCTACAGTTTAGGCTACATTGACTTCAAGCCGGAACTCATTGCAACAAATCATAACAGCGCCGTAAAGGACGTGGCCTTTCCCTTTGGGACGTCAGAGCTGTTTGCCACTTGTTCACAGAACGATATACGAGTGTGGCATACGGAGTCCTCTAAGGAGCTTCTGCGTATCATGGTTCCTAACATAACGTGCAACGCGTTGGGCTTCATGCAGGACGGCAGGagcatcttcagtgCTTGGAATGATGGGAAGATTCGCGTGTTCACTCCAGAGAGTGGGAAGCTGAAGCTGATCATTCATAATGCCCACAGCATGGGAGTTACTGCCATAGCAGCGACCAATGACTGCAAGAGGATCGTCAGTGGAGGGGGAGAAGGACAGGTGAGAGTCTGGGAGATATTCCAAAACTCATATCGTCTCATTGAGACCATGAAGGAGCACAAAGCCACGGTTAACTGCATCAAGATCAAGAGTAACGACAAGGAGTGTGTGACAGCCAGCTCCGATGGAGCCTGCATCATCTGGGACCTAGTGAGGTTCGTGAGGAATCAAATGGTCTTGTCCAACACCCTGTTCAGCGTTGTATGTTACCACCCCGAGGAATTCCAGATCATCACCAGTGGCACTGACAGAAAGATTGGCTACTGGGAGGTGTATGACGGTTCTGCAATCAGAGAACTCGAGGGCTCCTTGTCTGGAGCTATAAACGGCATGCACATTTCTGATGAGGGAAAATATTTTGTGACTGGTGGAGATGACAAATTACTGAAGCTCTGGCACTATTCTGACGGCGAAGTGACCCATGTTGGCGTGGGGCACAGCGGAAGCATCACAAACGTGAGGATCTGTCCCAACAGCAGATGCATTGTGAGCACCAGTGCCGACGGAGCCATCCTAAGGTGGAGATACCCACGAACCCTAAACAGTGAATAAGATCACCTAATGCAGTTCGGGTGTACATCGCGTTGCATTACTTCTTCTTGCAAATGACTGTATTGCAAATTAGGTTATGAATTCTTACGAGATTTAAACAGTACCGTTAAACAGTcgttttattgaaataaagcaGCCTAGAGCCCCA

Function

symbol description
cfap52 Predicted to be involved in cilium assembly. Is expressed in nervous system and pronephros. Orthologous to human CFAP52 (cilia and flagella associated protein 52).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24728 CFAP52, WDR16; cilia- and flagella-associated protein 52

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241626.1 True 2610 mRNA 0.44 14 10509922 10516964

Neighbor

gene id symbol gene type direction distance location
grb2a grb2a,grb2,LOC107733915,LOC107728184,LOC107704009,LOC105012273,LOC107659857,LOC108441871 coding downstream 82512 10411701 ~ 10427410 (-)
mif4gda mif4gda,LOC107728181,LOC107561027,LOC107659858 coding downstream 98658 10408908 ~ 10411264 (-)
gga3a gga3,LOC107704010,LOC107573533,LOC107733910,LOC107659859 coding downstream 103465 10399345 ~ 10406457 (-)
sumo2a LOC107573531,LOC107733894,LOC107704011,LOC106574529 coding downstream 111291 10395173 ~ 10398631 (-)
jpt1a LOC107728178,LOC107659861,LOC107733897,LOC107561029,LOC107573532 coding downstream 115706 10390047 ~ 10394216 (-)
LOC122346769 LOC107733892,LOC107555367,LOC107703995 coding upstream 154 10517118 ~ 10522696 (-)
LOC122346899 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 coding upstream 200917 10717881 ~ 10729269 (-)
sec16b sec16b coding upstream 413606 10930570 ~ 10943617 (-)
dr1 dr1,LOC107555385 coding upstream 468560 10985524 ~ 10988423 (-)
zgc:109982 LOC107678358,LOC106920129,LOC103368644,LOC103139842,LOC107733899,LOC105940069,LOC103463988 coding upstream 474011 10990975 ~ 10996060 (-)
G44213 NA non-coding downstream 121480 10388044 ~ 10388442 (-)
G44210 NA non-coding downstream 133344 10376140 ~ 10376578 (-)
G44209 NA non-coding downstream 136354 10373170 ~ 10373568 (-)
G44208 NA non-coding downstream 137070 10372640 ~ 10372852 (-)
G44168 NA non-coding downstream 267413 10242210 ~ 10242509 (-)
G44338 NA non-coding upstream 64445 10581409 ~ 10582029 (-)
G44339 NA non-coding upstream 65069 10582033 ~ 10582284 (-)
G44341 NA non-coding upstream 129169 10646133 ~ 10653370 (-)
G44350 NA non-coding upstream 170096 10687060 ~ 10895352 (-)
G44353 LOC107569358,LOC107704001,LOC107555380,LOC107733907,LOC107757425,LOC107660462,LOC105019150,LOC108438877 non-coding upstream 177638 10694602 ~ 10904297 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 919 10434204 ~ 10509003 (-)
LOC122347367 NA other downstream 151072 10355877 ~ 10358850 (-)
tnrc6c2 LOC107701838,LOC107566423,LOC107754870,LOC107591908,LOC107718711,LOC107698681 other downstream 266497 10204617 ~ 10243425 (-)
cd7al LOC107710016,LOC107553302,LOC107669545,LOC107698686,LOC107710292,LOC107591915,LOC107553301,LOC107710015 other downstream 364754 10138905 ~ 10145168 (-)
c6h17orf67 cunh17orf67,LOC107591943,LOC107669532,LOC107701203,LOC103044666 other downstream 482242 10025453 ~ 10027680 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other upstream 62025 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other upstream 193081 10710045 ~ 10716741 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other upstream 431728 10948692 ~ 10985132 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other upstream 538071 11055035 ~ 11069466 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 2008792 12525756 ~ 12897718 (-)

Expression


Co-expression Network