gga1 (gga1,LOC107712552,LOC107656124,LOC107586353,LOC107710174,LOC107691488)


Basic Information

Item Value
gene id gga1
gene name gga1,LOC107712552,LOC107656124,LOC107586353,LOC107710174,LOC107691488
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8466738 ~ 8479836 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241652.1
CTTAGAGTCGTCACGTGTTTCATCGCGAGATTTGAGTCTTGTGATCTCGGGTGAAGATGGCGGCTCCGCCTGACGAGCAGAGCTTAGAGTCCCGCATCAACAAAGCGACCAACCCTTTAAATCGAGAAACTGACTGGGAGAGTATTCAGCTGTTCTGTGACCAGCTCAGCAATGAACCTGAAGGTCCACAGTTGGCCACCAGACTTCTTGCTCACAAGATTCAGTCTCCTCAGGAGTGGGAAGCCATGCAGGCGCTCACGGTTCTAGAGACCTGTGTGAAGAACTGTGGGAAAAGGTTCCATAACGAGGTGGGGAAGTTCCGTTTCCTGAACGAGCTCATCAAAGTGGTTTCCCCTAAGTATCTTGGTTCTCGAGCCCCAGAACCAGTAAAGAAAAAGGTTTTAGAAATGATGTACAGCTGGACTGTGAGTTTACCAGAAGAGACCAAGATTTCTGATGCTTACCAGATGCTAAAGAAACAAGGAATTATTAAGCAGGACCCAGACCTTCCTGAAGACAAGCTCTGCCCTCCTCCACCACCTAGGCCCAAAAACGCTATCTTTGAGGATGAGGAGAAATCAAAGATGTTGTCTCGCCTTCTGAATAGCTCTCACCCTGAGGACCTGCGGGCAGCAAACAAACTCATTAAAGAAATGGTtcaggagGATCAGAAGCGTATGGAGAAGGTGTCAAAGAGAGTGAATGCTATTCAGGAAGTAAAGGAGAGTGTTGGGCTTCTCACACAGCTACTGGGGGATTACAGCAAAGAGAGCGGCTCACATGGCAACGAGGAGTTAATTAAGGATCTTTACCAGCGCTGTGAGAAAATGAGGCCTACTCTGTTCAGACTGGCCAGTGATACTGAAGACAACGATGAAGCTCTCGCTGAGATCTTACAGGCAAATGACAGCCTAACGCAGGTGATAAATCTGTACAGACAGCTGGTGAAAGGCGAGGAAGTGAATGGAGACACCAGCAGCACCTCCAAACTCCCAGGCTACAGTACTGCTCTCTTGGATCTCACAGGGCTGGATACCTCTTCTTCGGCTCAGTCTTTCTCTGAATTTCCCTCTAAGACACTGTCTTCACAAGATTTGGGCATCAGCCTTTTGGATGATGAGCTCATGTCCCTGGGCTTAACTGAAGTCAATTCTAATCTGGCATCTTCTCAATCTGGAGATGCAGTGACATGGAATACTTTTCAGTCATCAGAGTCTGTGGATACAGCTGTTACTCCAGCCCCTCCAGTGCTGCTGCCGGTGGCGAGTGCTACCAAGACACCTGTTACTGTGCCTGTGACATCCACTAAATCCCTAGACGAGTTAGACCTGTTGGGGAAGACCCTGCTTCAGCAGTCTCTACCCCCAGAAAACCTTCAAGTCAAATGGGACAAACTTCAGTCTCAGTCCAAGCCCACACTAAGAGACCTTCAGATCAAGTCTGGAACCAACAATGCTACAACCCCCAGTCCTGTGTTGGCCTTCTCTTCTGAGCCAGGCAGTCTCTTGAATTCCCAGCTCCCAGCAGGCACCACTCCAGCTTCTACCCCTCAGGATGATATATCATTGGTGAATGTGACTGTGCCCCTGGAGTCTATCAAACCTAGTAGCTTGTTACCCGTGACAATCTTCGATAAACACAGCCTTCGAGTTCTGTTCCATTTCGCAAGAGACTCTCCACCAGCCCGGCAAGATGTTTTAGTGGTGATTATCTCAATGTTGTCATCCGCCCCTGTGCCCATCACTAATGTACGATTCCAGGCGGCCGTTCCTAAGAATATGAGAGTAAAGCTGCAGCCACCGTCAGGATCAGAATTACCTGCCTTCAATCCTTTATTGCCCCCTGCCGCCATTACACAGGTCCTGCTTTTAGCCAATCCTCAGAAGGAGAAGGTGCGGTTGAGATACAAACTGACATTTGATTTAGGAGAAGAATCGCACGATGAGAGCGGAGATGTAGAGCAGTTCCCTCCACCAGAGTCTTGGGgaaacatttaaagaacagACTGATTTCCTGCTAGCGGCCCCTCTGCTTCCTTACGGCAGTTCATATCCAGACTGTGTCAATGGCTCTGCCTTTGGTCCACATCCTTCTATCTACTCCTTAATGTCTGAATGAGTACTGGGAGGAGGCCTTTAAAGAACTCATTTTAATTCcagttgctctttttttttttttttcccagcttatttttttttgttttgttttgtggtatGTCAGGCCCTTTTTGTATGAAGCTTTAATTGTTTGAAAGTTAGAGACTTGAGTTTTGTGGtcatttatgacattattttcatgtgTGAATCGAGATACTGCGGTCTCAGTCGGCAGTAATGGCATAGAGCAAATTCAGTTTCTGCACTAATTGTTTCATTCTCATAGTGTTGATTAATAGGTTTTCACTTGCACACATTCTTgatcttattttgtgtgtgtgtgtgtgtgtgtttggttgtaTTGTCAGGCTGCATGTGGTTTTAATGGCaactaaaaaaatcaatttcttaGCAAGAAatagttcaaattcaaatggTCTATATTGCAAATCATACAGCCCCGCTTATCAATCATTGTAATTTTGTTCATCTTAATTTAAGATTGCCCTAAAATTGCCCCATGCGCACTGTACTGCTCTTGAACATCATGCTGATGTCTTGTTTATATTTACCGTACGTGcctaatcagatttttttttttttttttttcatgttgacGTGAATAGACATTTATGTATTGATGCTTGTTTTTAATTGGCAAAAGTTTTCcccttttctttgtctttttgtgaTTTCCTGAAGGTTCCACATGTAATCTGGGCTCTCCCGATGCAGTGGTTTAATAAATACTTTCACCTTTACCATTCCTATATGAGGTAGTTGAAGAATACTGTACTCAAGATGATAACACAGGTaattaaataactgtattttggTTATACGTAGGTGGAAGCAGGATGCTCCTGCATCTCTAGACAGGAATTGAAATCACTGTGTTCCCAAAGTAAACAATTCTAGTTTGTGTCACTCTTTACAGCTGAAGGTCTGCGATGAAGTCGGTTGCATTCCAGATCATTAATGTCCTTCCAACATGACAGTGTAAATAAAATCGGTATTGCTATTATGTACATTTGCCAAAAATTAATACAGAGACTAAACATATGGAGAAGTGAATGTAGtgcaaatatgtatttaagGGAAATAAAGTTATTCTTTTTCTCT

Function

symbol description
gga1 Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and early endosome membrane. Orthologous to human GGA1 (golgi associated, gamma adaptin ear containing, ARF binding protein 1).

NR:

description
PREDICTED: ADP-ribosylation factor-binding protein GGA1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241652.1 True 3218 mRNA 0.44 17 8466738 8479836

Neighbor

gene id symbol gene type direction distance location
cfap100 cfap100,LOC107562886,LOC107691496 coding downstream 27353 8431444 ~ 8439385 (-)
plxnb1b LOC107755667,LOC107586348,LOC107656121,LOC107691484 coding downstream 48968 8381140 ~ 8417770 (-)
si:dkey-19e4.5 si:dkey-19e4.5,LOC107586347,LOC107562898,LOC107710172,LOC103025619,LOC108427613,LOC108272187 coding downstream 87697 8374812 ~ 8379041 (-)
setd5 LOC107710169,LOC107716898,LOC107656119 coding downstream 92063 8346761 ~ 8374675 (-)
mtmr14 mtmr14,LOC107716897,LOC107710166,LOC107569464 coding downstream 161151 8295300 ~ 8305587 (-)
nprl2 nprl2 coding upstream 16799 8496635 ~ 8501268 (-)
LOC122346602 NA coding upstream 26932 8506768 ~ 8524993 (-)
si:dkey-45d16.4 si:dkey-45d16.4,LOC107681484,LOC107569613,LOC107711600,LOC108424794,LOC103024355,LOC108273264 coding upstream 67442 8547278 ~ 8549239 (-)
ube2o ube2o,LOC100331775 coding upstream 377698 8857534 ~ 8883164 (-)
LOC122347059 rhbdf2 coding upstream 406672 8886508 ~ 8932433 (-)
G43719 LOC108424762,LOC107710154,LOC107562891,LOC556764 non-coding downstream 92 8460906 ~ 8466646 (-)
G43710 NA non-coding downstream 11875 8454131 ~ 8454863 (-)
G43712 NA non-coding downstream 14419 8450787 ~ 8452319 (-)
G43709 NA non-coding downstream 16052 8449138 ~ 8450686 (-)
G43700 NA non-coding downstream 123224 8334362 ~ 8343514 (-)
G43734 NA non-coding upstream 15928 8495764 ~ 8496633 (-)
G43739 NA non-coding upstream 66517 8546353 ~ 8546563 (-)
G43791 NA non-coding upstream 119960 8599796 ~ 8794740 (-)
G43800 NA non-coding upstream 226950 8706786 ~ 8707974 (-)
G43855 NA non-coding upstream 542683 9022519 ~ 9022881 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 418730 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 696287 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 880371 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 1137173 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 1151964 7274840 ~ 7314774 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 228870 8708706 ~ 8713858 (-)
G43890 NA other upstream 780780 9260616 ~ 9261245 (-)
G43896 NA other upstream 786166 9266002 ~ 9267324 (-)
G43899 NA other upstream 789352 9269188 ~ 9270922 (-)
G43900 NA other upstream 791582 9271418 ~ 9272305 (-)

Expression


Co-expression Network