serbp1a (LOC107594603,LOC107692416,LOC107758366,LOC107724138)


Basic Information

Item Value
gene id serbp1a
gene name LOC107594603,LOC107692416,LOC107758366,LOC107724138
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16603295 ~ 16609663 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241680.1
CGGAAGAGAAGCGCGAGTCTTTTCCAGCCATCTTGTGGCATCTCGCAGCGAAGTGCTCGCTCAAGCCCCGTAGAATCGGAGGAGAATCCTGCTGAAAGGGGGCCATCATGCCCGGACATCTGCAAGAAGGTTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGATGAAGAGGATCCGTTTGAGGTATTAAAGCAGGCAGAACAGAAGAAGAAGGACGCGACCGCTCCTGGTGCCGCCAAGACGGCAGCGCAGGCTACAAAGCAGCCTAAAAAGGAgtcacagaaagaaagaagaaaccCAGTTCCCGAGAAGAAGGAAGAGACACAAGCCCCCGTTCCTCTCAAGAAAGACGGTATGAGGAAAATGGGCCGCCGACCTGAGCAGCAGGGTCAGCCAGGATCCCAGCCTCAGGGAGGTCAGGGGGAGGGTCGCCCGCCAGCCGACAGGCGGCCTGACAGGAGGCCACCACGTGAACGACGCTTTGACAAACCCGCTGAGGAAAAACCTGCTGAGGGTGGAGAATTCTCGGTGGAGAAGTCTGTGGGTGACAGGCCGTTCCGGGGTCGTGGAGGTGCCAGAGGAGGGCGCGGAGGCCGGGGCAGAGGTGTTGGCAGGACTGACGGCTTCGACTCTCGTGGCAAGCGAGAGTTTGACAGACACAGCGGCAGCGACCGATCcaGCCTGAAAGCAGAGGAAAAGCGAGGAGGGAGTGGATCTCATAACTGGGGCACTGTTAAAGATGAGTTGAGCGAGCTTGACCAGTCAAATGTTACTGAGGACACCCCTGAAGGAGAGGAGCACCCACCTGCTGACTCGGAGAACAAGGAAAATGAGGTTGAAGAGATTAAAGAAGAAGGTGCTAAGGAGATGACTCTGGATGAATGGAAAGCCCAGCAGAGTAAAGAGAGAGCCAAAGTGGAATTCAACATTCGTAAGGCCAACGAGGGAGCGGATTGGAAGAAAGGATACGTTCTGCACAAGTCTAAGGCTGAGGACGCCTCTGTTGATGATGCTGCTGGGGATCACCACTTCCGTAAACCAGCTAATGACATTACATCCCAGCTGGAGATTAACTTTGGAGACCTGGGCCGCCCAGGACGTGGTCGTGGAGGACCACGAGGTGGCAGAGGAGGCCGTGGAGCTGCTGCTACTAGGCCACCTCGTGAACGCAGGCCAGACAAGGCCGGTGGAGTGTCTGTCCCTAATGTGGACGACCCAGAGGCTTTCCCAGCCCTGGCTTAAGCTGCCCAGACGGCACACTCTGCTCGCCCAGGAGGATCACTCCTCTATGGGTCTTTGTCTACGAGGCTTGCATGCTAATGGATCCTTCAGCAGATGAAATGATGGAAGACTGTCATCCATGCCATTCACCCCTGAGGACTGATTTTAcctgttttagaaaaaaaagatggaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggacggACTTCTTGCTATTATGAAGCAAATTATTGGTCGAGGTTTTGTATTTAGAAATAAGGTAGCAGGGATGTTTTCATACAgtgtttcttttgttgtttctttttttttctcagaaattatGCATTGTTCATGGATACTTTTTGTACTGCTGcttgaaaatatgcatttccaAAAATAGGTGTGAAGAGCACACTGGTTTATCTTAAGGTGTCCCGTTGCTTGctttttacactgaaaaacagaaaacaaggaGGCCATTTTAGGAGTAAGATCTACAAGTTAgtcttttaatttgtaaaggtTACTGTATTTCTAAGGGACATTATAGAGCATTTTGGTGCTGCTCATTGTAGGATTTAACACCTCGGTTCCCTGAAAGCAGGCCTTGAAACAATCTGAAAACtgattaaatgtacaatttatgATTCATAACTTAATGCCAAGATGTAGTTCCGATGATTCAGTTGCACTCACCACGAAAAGTGTCTTTTATCGAATGACCACTGTAAAGTTCAACATGGTGTCTTTATGCCATTGACTCTGGTAACTCAGGATAGTATCATTCTTGTTACGCAAAGTTCCAGTGTAAATACAAGAAGCAAGTTTACACACCGCACTCCTGTTTACTGAAATATGTGAGCCAGGTAATGGATAAATCCTGttagaaatgacattttctttctgCCCCATTGCTTTTACAACAGCTTTACTGCATAACTGATCTGAAAGAAACACCATCCTGTTCAGTGTGGAACAGCTGAGTGATGTGTGAATTCCTACCCTGCTATTAGACCTCTGTCAATAATTAAAAGATGGTCGATTCATA
>XM_043241681.1
GGAAGAGAAGCGCGAGTCTTTTCCAGCCATCTTGTGGCATCTCGCAGCGAAGTGCTCGCTCAAGCCCCGTAGAATCGGAGGAGAATCCTGCTGAAAGGGGGCCATCATGCCCGGACATCTGCAAGAAGGTTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGATGAAGAGGATCCGTTTGAGGTATTAAAGCAGGCAGAACAGAAGAAGAAGGACGCGACCGCTCCTGGTGCCGCCAAGACGGCAGCGCAGGCTACAAAGCAGCCTAAAAAGGAgtcacagaaagaaagaagaaaccCAGTTCCCGAGAAGAAGGAAGAGACACAAGCCCCCGTTCCTCTCAAGAAAGACGGTATGAGGAAAATGGGCCGCCGACCTGAGCAGCAGGGTCAGCCAGGATCCCAGCCTCAGGGAGGTCAGGGGGAGGGTCGCCCGCCAGCCGACAGGCGGCCTGACAGGAGGCCACCACGTGAACGACGCTTTGACAAACCCGCTGAGGAAAAACCTGCTGAGGGTGGAGAATTCTCGGTGGAGAAGTCTGTGGGTGACAGGCCGTTCCGGGGTCGTGGAGGTGCCAGAGGAGGGCGCGGAGGCCGGGGCAGAGGTGTTGGCAGGACTGACGGCTTCGACTCTCGTGGCAAGCGAGAGTTTGACAGACACAGCGGCAGCGACCGATCCCTGAAAGCAGAGGAAAAGCGAGGAGGGAGTGGATCTCATAACTGGGGCACTGTTAAAGATGAGTTGAGCGAGCTTGACCAGTCAAATGTTACTGAGGACACCCCTGAAGGAGAGGAGCACCCACCTGCTGACTCGGAGAACAAGGAAAATGAGGTTGAAGAGATTAAAGAAGAAGGTGCTAAGGAGATGACTCTGGATGAATGGAAAGCCCAGCAGAGTAAAGAGAGAGCCAAAGTGGAATTCAACATTCGTAAGGCCAACGAGGGAGCGGATTGGAAGAAAGGATACGTTCTGCACAAGTCTAAGGCTGAGGACGCCTCTGTTGATGATGCTGCTGGGGATCACCACTTCCGTAAACCAGCTAATGACATTACATCCCAGCTGGAGATTAACTTTGGAGACCTGGGCCGCCCAGGACGTGGTCGTGGAGGACCACGAGGTGGCAGAGGAGGCCGTGGAGCTGCTGCTACTAGGCCACCTCGTGAACGCAGGCCAGACAAGGCCGGTGGAGTGTCTGTCCCTAATGTGGACGACCCAGAGGCTTTCCCAGCCCTGGCTTAAGCTGCCCAGACGGCACACTCTGCTCGCCCAGGAGGATCACTCCTCTATGGGTCTTTGTCTACGAGGCTTGCATGCTAATGGATCCTTCAGCAGATGAAATGATGGAAGACTGTCATCCATGCCATTCACCCCTGAGGACTGATTTTAcctgttttagaaaaaaaagatggaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggacggACTTCTTGCTATTATGAAGCAAATTATTGGTCGAGGTTTTGTATTTAGAAATAAGGTAGCAGGGATGTTTTCATACAgtgtttcttttgttgtttctttttttttctcagaaattatGCATTGTTCATGGATACTTTTTGTACTGCTGcttgaaaatatgcatttccaAAAATAGGTGTGAAGAGCACACTGGTTTATCTTAAGGTGTCCCGTTGCTTGctttttacactgaaaaacagaaaacaaggaGGCCATTTTAGGAGTAAGATCTACAAGTTAgtcttttaatttgtaaaggtTACTGTATTTCTAAGGGACATTATAGAGCATTTTGGTGCTGCTCATTGTAGGATTTAACACCTCGGTTCCCTGAAAGCAGGCCTTGAAACAATCTGAAAACtgattaaatgtacaatttatgATTCATAACTTAATGCCAAGATGTAGTTCCGATGATTCAGTTGCACTCACCACGAAAAGTGTCTTTTATCGAATGACCACTGTAAAGTTCAACATGGTGTCTTTATGCCATTGACTCTGGTAACTCAGGATAGTATCATTCTTGTTACGCAAAGTTCCAGTGTAAATACAAGAAGCAAGTTTACACACCGCACTCCTGTTTACTGAAATATGTGAGCCAGGTAATGGATAAATCCTGttagaaatgacattttctttctgCCCCATTGCTTTTACAACAGCTTTACTGCATAACTGATCTGAAAGAAACACCATCCTGTTCAGTGTGGAACAGCTGAGTGATGTGTGAATTCCTACCCTGCTATTAGACCTCTGTCAATAATTAAAAGATGGTCGATTCATA

Function

NR:

description
PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like isoform X1

GO:

id name namespace
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K13199 SERBP1; plasminogen activator inhibitor 1 RNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241680.1 True 2292 mRNA 0.48 8 16603295 16609663
XM_043241681.1 False 2288 mRNA 0.48 8 16603295 16609662

Neighbor

gene id symbol gene type direction distance location
slc35d1a slc35d1a,LOC107724140,LOC107551012,LOC107684099,LOC107758361,LOC107594604,LOC107692433,LOC108441641 coding downstream 25232 16571144 ~ 16578063 (-)
mier1a mier1,LOC107758364,LOC107724131,LOC107684256,LOC107551013,LOC107692413 coding downstream 32834 16563950 ~ 16570461 (-)
dmrt2b dmrt2b,LOC107684342,LOC107551024,LOC107692445 coding downstream 214881 16384336 ~ 16388414 (-)
LOC122347428 tmem125,LOC107725195,LOC107684333,LOC107551025,LOC107594640 coding downstream 253026 16340305 ~ 16350269 (-)
tie1 tie1,LOC107731644,LOC107684058,LOC107725190 coding downstream 291642 16299579 ~ 16311653 (-)
hsd17b7 hsd17b7,LOC107551038,LOC107758362,LOC107692446,LOC107724130 coding upstream 617 16610280 ~ 16617199 (-)
ddr2a ddr2,ddr2a,LOC107724144,LOC107551036,LOC107594601 coding upstream 8909 16618572 ~ 16647615 (-)
uap1 uap1,LOC107724142,LOC107551035,LOC107692418 coding upstream 39802 16649465 ~ 16659733 (-)
LOC122346973 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding upstream 66622 16676285 ~ 16683433 (-)
nos1apa nos1ap,LOC107711121,LOC107594625 coding upstream 77715 16687378 ~ 16764274 (-)
G45770 NA non-coding downstream 280490 16320413 ~ 16322805 (-)
G45753 NA non-coding downstream 332187 16270902 ~ 16271108 (-)
G45752 NA non-coding downstream 333903 16268915 ~ 16269392 (-)
G45751 NA non-coding downstream 335753 16267183 ~ 16267542 (-)
G45709 NA non-coding downstream 484709 15902216 ~ 16118586 (-)
G45897 NA non-coding upstream 577793 17187456 ~ 17187794 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding upstream 904975 17514638 ~ 17518605 (-)
G45993 NA non-coding upstream 1197958 17807621 ~ 17808115 (-)
G46000 NA non-coding upstream 1212873 17822536 ~ 17822735 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 1430701 18040364 ~ 18044630 (-)
fam183a fam183a,LOC107551015 other downstream 239275 16361167 ~ 16364020 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other downstream 542829 16059893 ~ 16060466 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other downstream 543528 16058968 ~ 16059767 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other downstream 838188 15756309 ~ 15765107 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other downstream 997825 15603910 ~ 15605470 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 206977 16816640 ~ 16830261 (-)
G45895 NA other upstream 577026 17186689 ~ 17187318 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other upstream 626127 17235790 ~ 17246386 (-)
G45910 NA other upstream 698152 17307815 ~ 17308478 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other upstream 772664 17382327 ~ 17414139 (-)

Expression


Co-expression Network