utp6 (utp6,LOC107710019)


Basic Information

Item Value
gene id utp6
gene name utp6,LOC107710019
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10101483 ~ 10106808 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241684.1
CGTCGGAGATATTTTCTGATGAGCAACCGGATGTAGAGCGCATGACAACTTCCCGTCCCCACGTGTGTAGAGATGTGAAGCAAGTCAGGGTTCGCTACTTTGCTAAGACTCTGAATAACttgtacatttgtttaaagATTTACCTCACAACCCTTAGAAATGGCAGACAGTGTGCAACAGCGATTAGAGGACAGAATACCGGCGCTCGAACAGCTAGAAAGAGTCGGTTTGTTCACCAATAAAGAAGTTAAGTCTATGTTAAAAAGATCTACTGCTCTCGAATACAAGCTTCACCGAAAATCTCAGAGCAAAGGCGAATTTATTGCGTATATACAGTATGAAATAAACGTCCTGGAGCTCATCAAGAAGAGAAGAGCAAGAATTGGTTATCATTTTAAACGGGAGGAAATTGAGTATCCCATCATTCATCGCATAAACCATATATTCAGATGGGCTACAACAAAATGGCAGGAAGATGTGCAGCTTTGGCTTTCTCAGGTTGCCTTCAATAAGAAATGGggcACAAAGTCTCAACTCAGCAAGGTTTTGTCATCTATGTTAGCTATCCATCCTGACAAACCAGCTTTGTGGATAATGGCTGCTAAGTGTGAGATGGAGGACAGGAACTCTTCAGAGAGTGCTCGCCATCTCTTCCTCCGTGCCTTGCGCTTCCATCCTGAGAATAAGAAGGTCTATCAGGAGtattTCCGGATGGAACTCATGCATGCTGAGAAACTAAGGAAACAGCAGCAGGAGTTGGAGCAAGCTAAAATAGACGTGGGGGAATATACCTTTTCTGCTGAAATCTTGAGTGGAAAACTTGCTGAGGTGGTGTACAGAGATGCTGCACAAAAAATTAAAGGGGCTGAATTCATGTTGTCACTGCTACAGATTGCTGCCATCTTCGACTTCACAAAGGAGCTACAGGACACCATCCTACAggaCGTGCAGAGTCAGTATGTTGAAGACTGCGTGATGTGGGATTTCATGGCTAAGCGGGAGCTGGATGCTGCTGGAGCCCCGGAGCTTCAGTCTGCGAAGGGAAGAGCTTCTGATACGGATCGCAGAGAAGAACGCTGCTGCGTCGTTTACGAAGAGGCACTAAAGAGCCTTAATACAGaggcCATGTGGACATGTTATGTCACATTCTGTCTTGAGCGATATAAGAGGAAGACAAACGTCACTGAACTCAAGGAAAAGAGAAAGGAACGACTACTCGGAGTCTTACAGAGTGCTCATGACGCCAAGCTTTTGCAAGAGACATTCTACAAGAACTGGctgcagGTCCTTTTGTCGTCAGGGGATACAGTATCTGCTACCCAGATCGCCATCACAGCCACCCAGTACTTCAGCCAATCAGTTGAGATGTGGAGCTTCAGCCTCCAGATATTGGTCCATATGGAAAGCTCAGAGGCGGGACGTCTATTCCAGGAAGCCCTGAAACACGTGAATCCCAAGGAAAGTCTGCCGTTATGGCAGCTGCAGGCAGACTGGAGCATGACCTCACAGGTACCAGAAGACACCGAGACCTTTTTTCAGAAAGGGCTTGTGTCTCCAGCTCCTGCAGTGTCATCTGCCATGAAGGAGAAATACCTTGAATGGTCATATAAAACTGGTGGTTACAAAAGGGCTAGAAAaactttcaaaagCTTACATGAACACAGACCCTTCACCAAGACATTCTTCAGGAAGATGATTGAGATTGAAAAAGAGCAGGAGACACCAAAGATGAGTAACCTCAGAGACTACTATGAGCGAGCGCTTCGTGAATTCGGTTCCTCAGATGAAGATCTCTGGATTGAATACATCAAGGAAGAGTTAGAAAGGCATGGAAACCCAGAAAACTGCGGGAAGCTCCACTGGAGGGCTGTTAAGACCCTGGAGGGCGAAAGCGTTGAGCGTTTTACCACGAAGTACACACTTCTGCAGACCGGGCACATGTAAACACAACATCAGTCTTCAACGTTTTTTCTGATTTGTTCATATTTGGACCTCAAACCTCGATTTCTCTTTCAAAAGCCCAATTCCCTTTTTCCTCTGAAATGTTTCAAACATGCTAGTGCATGgacatttgtgcttttctgtTGTTCCAGTAATAAACATTTAAGACATTTgtcttttaaa

Function

symbol description
utp6 Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within RNA processing. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Orthologous to human UTP6 (UTP6 small subunit processome component).

NR:

description
U3 small nucleolar RNA-associated protein 6 homolog

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14557 UTP6; U3 small nucleolar RNA-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241684.1 True 2124 mRNA 0.45 19 10101483 10106808

Neighbor

gene id symbol gene type direction distance location
trim25 trim25,LOC107710025,LOC107553309,LOC107669536 coding downstream 52615 10039427 ~ 10048868 (-)
LOC122346913 nptx1,LOC107750979,LOC107553322,LOC107667295,LOC107701212 coding downstream 319500 9778250 ~ 9781983 (-)
LOC122346819 rptor,LOC107553319 coding downstream 390885 9586425 ~ 9710598 (-)
si:dkey-237i9.1 LOC107567927,LOC107667603,LOC107591922,LOC107667296,LOC107731096,LOC108272757,LOC108424802 coding downstream 748815 9308586 ~ 9352668 (-)
nol11 nol11,LOC107567930,LOC107734779,LOC107728513,LOC107660301 coding downstream 802440 9283403 ~ 9299043 (-)
tefm tefm,LOC107591914 coding upstream 17007 10123815 ~ 10126741 (-)
znf207b znf207b,LOC107669543,LOC107710013,LOC107553300 coding upstream 39416 10146224 ~ 10152064 (-)
rhbdl3 rhbdl3,LOC107718708,LOC107701837,LOC107698683,LOC107591910,LOC107754871 coding upstream 60428 10167236 ~ 10202756 (-)
sept9b sept9b,LOC107754867,LOC107566422,LOC107561033,LOC107718712,LOC107674495 coding upstream 189196 10296004 ~ 10335041 (-)
zgc:174863 NA coding upstream 270523 10377331 ~ 10384083 (-)
G44105 NA non-coding downstream 3304 10097980 ~ 10098179 (-)
G44095 NA non-coding downstream 17208 10083990 ~ 10084275 (-)
G44065 cbx4,LOC107710010,LOC107669529,LOC107553295 non-coding downstream 83415 10013936 ~ 10018068 (-)
G44040 NA non-coding downstream 158265 9942615 ~ 9943218 (-)
G44037 ppp1r27,LOC107710012,LOC107591937,LOC107553297 non-coding downstream 159477 9941570 ~ 9942006 (-)
G44167 NA non-coding upstream 131611 10238419 ~ 10238618 (-)
G44168 NA non-coding upstream 135402 10242210 ~ 10242509 (-)
G44208 NA non-coding upstream 265832 10372640 ~ 10372852 (-)
G44209 NA non-coding upstream 266362 10373170 ~ 10373568 (-)
G44210 NA non-coding upstream 269332 10376140 ~ 10376578 (-)
c6h17orf67 cunh17orf67,LOC107591943,LOC107669532,LOC107701203,LOC103044666 other downstream 73803 10025453 ~ 10027680 (-)
anapc11 anapc11,LOC107553313 other downstream 152495 9945667 ~ 9948988 (-)
G43900 NA other downstream 829178 9271418 ~ 9272305 (-)
G43899 NA other downstream 830561 9269188 ~ 9270922 (-)
G43896 NA other downstream 834159 9266002 ~ 9267324 (-)
cd7al LOC107710016,LOC107553302,LOC107669545,LOC107698686,LOC107710292,LOC107591915,LOC107553301,LOC107710015 other upstream 32097 10138905 ~ 10145168 (-)
tnrc6c2 LOC107701838,LOC107566423,LOC107754870,LOC107591908,LOC107718711,LOC107698681 other upstream 97809 10204617 ~ 10243425 (-)
LOC122347367 NA other upstream 249069 10355877 ~ 10358850 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other upstream 327396 10434204 ~ 10509003 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other upstream 472181 10578989 ~ 10835525 (-)

Expression


Co-expression Network