rab6ba (rab6ba,rab6b,LOC102207753,LOC100696791,LOC103151367)


Basic Information

Item Value
gene id rab6ba
gene name rab6ba,rab6b,LOC102207753,LOC100696791,LOC103151367
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12944295 ~ 12965465 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241696.1
ATGTTTTCCTCAGATCCCACTGATCTGTGGACCCCTATCGATCCGGCAGCTGCCCACAGGAGCTACAACCGAGGAGACCAGGGCCATCTGgataaaagcacacaaaacGCCTCCGCGACAATTGGAATTGACTTCCTGTCAAAAACCATGTATTTGGAGGACAGAACGTTGGGGCTCTCTGACTTGCAGGTTCGGTTGCAGTTGTGGGACACGGCAGGCCAGGAACGTTTCAGGAGCCTCATTCCGAGCTATATAAGAGACTCCACCGTAGCTGTGGTGGTGTATGACATCACAAatGTGAATTCATTCCAGCAAACTTCCAAATGGATCGATGATGTGAGAACGGAgagaggaagtgatgtcatcaTCATGCTGGTGGGCAATAAAACAGATCTGGCAGATAAGAGGCAAATCACGATCGAGGAAGGCGAGCAGCGGGCCAAGGAGCTGAGTGTGATGTTTATCGAGACCAGTGCCAAGACAGGCTACAATGTCAAACAGCTGTTTCGACGTGTGGCAGCTGCCCTTCCAGGAATGGAGAGCATGCAAGAGACAAGCAAAGAAGGCATGATTGACATTAAATTGGACAAACCACAGGAGCCTCCGACTACCGAGGGTGGATGTTCCTGTTAATAGCTCACATCTGATTTCCAGCATCATCTACACCACGTGCTTGTTGTGTTGCTTCCTCTTGGTTAGCTTCCAGTTGTGTTTTCAGATTGGATATTTGGCCTTCCCATCTGACTTTAGTAACTGGTTGGAATCAGTGTTACAtcaatttcaaatgtaaaatagtaTACTTTAGTAACAAAATTGCCAAAAATCCTAAAAATTCgaaatcaacaaaaatgtagACTATGTCCAACGTAtatactttttgaaaatgtagagaggtagattttttttcttctttgttttgtatttttgtatacaaGGATGAGCACTAAATTCTATAATTTTGCCATAAAAAGCAGGATTCGAAAAGCAGGAGGGCAATTCAAACAACTAATAACCACAAAAATATGGAAAACGTGCATGTtagccatttttaaaagtatcatCTCAGTCCTGCTGGCTACTGTGCGCAAGATTATGTGAATCCGtacgttttttttctgactcGATGCACTTCATGCAATCAGCTCATTTCAGCCTGTTTTTCTTGCCGTGACAgaacttgaaattttaagtttaagGCCAAGTGaatttgtgtaaatgtgtcACTTCCGATCCCTAAAAACCTTTccatagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttctttttaaaaacacgttTATATGCGGTTCGTGTCTTAATTACGTGGTTTATTGAATGTTTACGGCATCATTTTTCTTTAGAATTTCCTGTTCACGATGAAAGGAAACGGCTCGTGCAAACGACCTAACACGAGAAAAGGATTCCCTTTCTTCggtggaatgttttttttattctttaactAAATTAGGGCGTTTAGTGCAGTGCAGATAGTCGCAAGACCGTGAACGCGACAGAGGAGCAAATCATGCATCCAGACTTGTTCGTTCATATTTAATTGATTGGAATAACTCATTTGCACGTCAGCGGTTTTCCACGCCGATTCATCAAACAGCCCGATTCCATTGTAAATACATCAGCTGTCGTTTTCAAGCAGGCTTTAATATCAGAAATGCAAAGATGGGACATTCCTCCAAAAATAACTGTAGTTTCACTTTTAAGAAATTAGCATTATGCAGCATTATAGTGTTTGCCTCGTGTAGAAACCCACTCATGTCTACAGCTGCTCTTTGGGCCAGTAAATTGTAGTGCACTGACCGGGGACATACGTGTAGTATATCAGTTTCTTTGAAATGTGTTTCATGTGAATCCTAAATGCACTTTTTCGACAAAGGAAGATGTAAATGTTTCCAAATTTGCCGTCGAACGTCTGTCCTCGAAACCACTTTAGAGTTCAAACTGTAGCGTACATCTCTGTGAAAACCTCTCGAGGGTCACTGTACAGATAAACTGTTTGTAAATTTGCTTCACACGACGTCATATACGAGTCGAGACTAGCTATTTGTGACATTGAGAAATCGTGAGTAGGAGCACATGACACAGCGCCCCGAATCCAAGCAGAATCCAGCGAGGTTTAGTCGGAATGGAAGGTGAATTCCACTGAACTGACTGACTCATATCAAACCCTTTTCGTCACGCTTTTGGTTCGTTTGGAAGCTTGAAGGGGATCAGATTCGTCTGTGCCGATGCTTTCTCAAATCGCAGAGAGGTTCAGAAAAGCTGGGTGGaggtatttattgtttttgtttacattttgctttCTGTCTTCTGAAAAGAGGTTTGAATTTAATGGGGCGCAGATACGCGTCATATCATCATTGTACCTGTACAACCGGTAGTCATTGTGATTGACACGACGCTACATCAGCCTTGGGTGAATGTCTGTGCGTGAGTTGAGTTATGCTTTTAAGGGTGCAACCATTCCCGGTGTATATGTTTTAGCTCGGTGGAGCCAGCCTGATTGATTCAGAGCTAGCTTTACCATTCACACTGTATAGAAATCTAGCATGTTGGTCCAAAtcagtaaaatcaataaaagtgtcttattaccaaaaatgta

Function

symbol description
rab6ba Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Orthologous to human RAB6B (RAB6B, member RAS oncogene family).
rab6b Enables myosin V binding activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Located in Golgi apparatus.

NR:

description
PREDICTED: ras-related protein Rab-6B isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241696.1 True 2648 mRNA 0.42 7 12944295 12965465

Neighbor

gene id symbol gene type direction distance location
slco2a1 LOC107753639,LOC107694117,LOC107552274,LOC107593170,LOC107696767,LOC107752643 coding upstream 46398 12881334 ~ 12897897 (+)
ryk ryk,LOC107752642,LOC107696766,LOC107694116,LOC107753628 coding upstream 66510 12838229 ~ 12877785 (+)
sned1 sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186 coding upstream 108384 12806500 ~ 12835911 (+)
LOC122346411 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding upstream 178596 12760860 ~ 12765699 (+)
LOC122346842 LOC107752644,LOC107696763,LOC107593183,LOC107552264,LOC107753650,LOC107694115 coding upstream 183887 12740819 ~ 12760408 (+)
cep63 cep63,LOC107590660,LOC107694114,LOC107552272 coding downstream 6626 12972091 ~ 12981529 (+)
amotl2a amotl2a,LOC107717938,LOC107694113,LOC107752638,LOC107590659,LOC107696770,LOC107552270 coding downstream 39526 13004991 ~ 13014401 (+)
sap130a sap130a,LOC107696772,LOC107590658,LOC107717942,LOC107552246 coding downstream 59082 13024547 ~ 13038280 (+)
LOC122346752 LOC107590657,LOC107694127,LOC107717944,LOC107696773,LOC107752637,LOC107552269 coding downstream 74058 13039523 ~ 13058121 (+)
gpr17 gpr17,LOC107752663,LOC107717943,LOC107694121,LOC107590682,LOC107552259,LOC107696754 coding downstream 93394 13058859 ~ 13064429 (+)
G44622 NA non-coding upstream 244718 12664820 ~ 12699577 (+)
G44611 NA non-coding upstream 272630 12564092 ~ 12671665 (+)
G44606 LOC107593190,LOC107696746,LOC107552261,LOC107753661,LOC107694109,LOC107752664 non-coding upstream 450653 12492953 ~ 12493642 (+)
G44604 NA non-coding upstream 462113 12477124 ~ 12482182 (+)
G44575 hdlbp,LOC107733253,LOC107694132,LOC107552253,LOC107696756,LOC107752661 non-coding upstream 950158 11993558 ~ 11994137 (+)
G44615 NA non-coding downstream 117915 13083380 ~ 13084230 (+)
G44640 NA non-coding downstream 128391 13093856 ~ 13095910 (+)
LOC122346816 NA non-coding downstream 135814 13101279 ~ 13103566 (+)
G44872 NA non-coding downstream 348088 13313553 ~ 13313854 (+)
G44873 NA non-coding downstream 369724 13335189 ~ 13335542 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 138595 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 417338 12521773 ~ 12526957 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other upstream 784396 12154268 ~ 12159899 (+)
G44588 NA other upstream 851840 12087399 ~ 12092455 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other upstream 933756 12002147 ~ 12010539 (+)
smx5 lsm2,LSM2,smx5 other downstream 115100 13080565 ~ 13082119 (+)
G44645 NA other downstream 143270 13108735 ~ 13109366 (+)
G44887 NA other downstream 428764 13394229 ~ 13409912 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 1006708 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 2270700 15236165 ~ 15244280 (+)

Expression


Co-expression Network