LOC122346854 (zc3h3,LOC107731631,LOC107556980,LOC107717141,LOC107692390,LOC107704522)


Basic Information

Item Value
gene id LOC122346854
gene name zc3h3,LOC107731631,LOC107556980,LOC107717141,LOC107692390,LOC107704522
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15092139 ~ 15120613 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241713.1
ATGGATGAGTCCCCAGGCCTGATTGTAAAGCCCAGCAGCTGTGACCCTATCTCCGCCACACATAAGCCCGCATCCCATAGGGTCATCAAAACACGCTACAAGATTGACACACGCAGAGCCCATACAATCCACCACAACCCAACTCTTTCCTACAGGGTCAAGAGAGTGCATTCTGCCAGaatcCTCCTGCAGAATCGACTAAGGACAGCTTCAGAAAGGCAGTGGAGGGGTCGAAGCATGAGATGGATCGGTGGAGCATTGTACAGAGTCTCAGCCAACAAGCTCTCTCGCACTCAAACCACCTGCACACCTAACAGCAGACTAGGAGAATGGTACAATCCATATGCTTCCTCGGCTGGTAACCAGGGAAGAACATCAGCCACACGTTACGTAGCCAGTCGTGCTGTGCAGAAGAGTTTAGCTATAATACGACAGGCCCGACAGAAGAAACAGAAGGCCAAGCAGTACTGCATGTACTATAACCGTTTCGGCAAGTGCAACCATGGTGATGCCTGTCCCTACATCCATGACCCTGACAAAGTGGCCGTCTGCACCAGGTTTCTCCGAGGCACATGCAAACAGACAGATGGGACTTGTCCTTTCTCGCATAAAGTAGCCAAAGAGAAGATGCCTGTGTGCTCATATTTTCTGAAGGGGATATGTAATAACAGTAGCTGTCCCTACAGCCATGTTTATGTGTCTCGCAAAGCTGATGTGTGCAAAGACTTTGTCCGAGGCTACTGCCCTCAGGGAGATAAGTGCAAGAAGAAACACACACTGGTGTGTCCAGACTTCTCAAGTACCGGTGCGTGTCCACGTGGATCCAAATGCAAACTGCACCACAGACAGAGCTCAAAACGATCCGCCTCTAACGCAAGCTTTGGACCGGCCAGGAAAGCACGCActacagacattttaaagagTTCAGAGGTAGTTCAGACACAATCTACAGAGTCCACAGAGGCAGATGAGGGCTCATCCTGCTCGGGTCCTGAGAAGCTACCTTCCTTCATCTCCTTGTCTAGCTCTCCTGACATGCCAGAGAACCCTGATACCCCAAAGGTCCCTCCTGCAGCAGGCCCACAGGCCAaagGAAAGCCGCTACATATCAAGCCACGATTCTTATCTACAACACAGACAGAAAGCTTGCCGAAGGAGGGCTGATGGTGGGTGTTTTAATCGttaacaaaaatcattttaacttgATTTTTTACTTTAGTAATATATACAGCATAAATTCTGCTGTTACCAAATGGTTTACAAAGACGTTTTTACATGAGACATTCACAGCTACTTTCTGGTGTGAAGTCACATGTTTGGTTTCAGGAATTTTGCAATGCAATTCtaagattttattaaacatttctcaGAATACGTTCATTACAGAACTCAGTTTCTGCATTATAATCAAATGCTATACTGACAAAATGCAAACGTTCGCATCGAGTTCTTAGagttagtttaaaaatgtatacgtATTTCTCAGGgattttaaaaaaggcttttcTGTAGTGGTTTGTTATGCAgagaaattgtattatttcaaatGCAAACTTGTGAAAATCTATTTTCAAATGTGGAAATAACTCAATAAAATTGCTTTGTGATTTGCA

Function

symbol description
zc3h3 Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human ZC3H3 (zinc finger CCCH-type containing 3).

NR:

description
PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241713.1 True 1613 mRNA 0.45 10 15092139 15120613

Neighbor

gene id symbol gene type direction distance location
mafaa mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 coding downstream 5573 15082218 ~ 15086566 (-)
usp1 usp1,LOC107591200,LOC107731620 coding downstream 129567 14957029 ~ 14962572 (-)
angptl3 angptl3,LOC107704519,LOC107731634,LOC107556555,LOC107717137,LOC107692388,LOC107591184 coding downstream 163014 14924139 ~ 14929125 (-)
atg4c atg4c,LOC107704517,LOC107731653,LOC107556554,LOC107591181,LOC107692386 coding downstream 177144 14907367 ~ 14914995 (-)
foxd3 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 coding downstream 279515 14805304 ~ 14812624 (-)
LOC122346528 LOC107731631,LOC107704508 coding upstream 24177 15144790 ~ 15148085 (-)
adcyap1r1b adcyap1r1b,LOC107731652,LOC107717143,LOC107692394,LOC107594619 coding upstream 66549 15187162 ~ 15211981 (-)
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding upstream 125816 15246429 ~ 15256160 (-)
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding upstream 210623 15331236 ~ 15333933 (-)
sgip1a sgip1,LOC107659047 coding upstream 224316 15344929 ~ 15394123 (-)
G45355 NA non-coding downstream 186431 14905502 ~ 14905708 (-)
LOC122346442 NA non-coding downstream 436108 14651716 ~ 14656031 (-)
G45277 NA non-coding downstream 598117 14493121 ~ 14494022 (-)
LOC122346673 NA non-coding downstream 813110 14263789 ~ 14279029 (-)
G45271 sgip1,sgip1a,LOC107739126 non-coding downstream 875863 14214638 ~ 14216276 (-)
G45543 NA non-coding upstream 64539 15185152 ~ 15239640 (-)
G45544 LOC107731621,LOC107675939,LOC107556983 non-coding upstream 112654 15233267 ~ 15745536 (-)
G45560 NA non-coding upstream 198772 15319385 ~ 15320034 (-)
G45579 NA non-coding upstream 362293 15482906 ~ 15484967 (-)
G45554 NA non-coding upstream 366050 15486663 ~ 15489101 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 898973 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1306236 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1410845 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 2194421 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 4022673 11055035 ~ 11069466 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 206970 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 368505 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 414773 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 483297 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 635696 15756309 ~ 15765107 (-)

Expression


Co-expression Network