G25660


Basic Information

Item Value
gene id G25660
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2194407 ~ 2195234 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU28960
TAATTATTTTCAGAATTCTCATTAGTTAGTCAAAAAAAACATTGTTCTTTTTGTCTTTTAAATTCTGCATAAATTACAGGCATTAGAACAAGAGCTATAATATATTCATATTTAAACTATACAATTGTAAAGTGTACAGTAAAGAGAATAAGACAGTAATTAAAATAGCAGGGAAATGTACTTAATTGTCATGAAAATAATGTAACGAACAAAAAAAAAAAATCTGAGGTCCTAAAAAAAGAGCCATCCTTTTTTGTTTCTTTCAATTTTGAGGTGATATGACCTGGACATAATCTTGAATGAGATACATCTGAATACTGTTGATTTGCCTGTCAGCACTGGCCTATTAGGCTAATATGTCTACTGTATGAATTGTTTTTCACCTTGTTAGTCAGTGGCATAATGAATGTACTACCACACCGCGTACACACTGGCTGTCATTGGCTATATTTTTACTGGAACAAAGAATGTGTAATGAAAAGAGACTATATACAGAGCCTTATTTTTCTATCATGACTATCTCTAGTGTTTGGCTTGTGTGGGAAACCATGTGCACTACCTGTCTTAATGCACTAAAAGAGCATGAATGTCAAAGCTTGCAGTTTCAAAAATGGCCACGCATCTTTGCACCCCAGTGATATGCTGAGCTACTGTAAATACAACATGTCATGTAATGGGTTCAAAACTGATAAATCATGTATTATTTGATTGCATTTTTCATTATTATAACTGCTGTCAGTGAAATTTAAGACTGTTCTGTCCAGAAAGAAAGAAATGTACATTTTTGTACACAGAAATGACACTATTATATTTTTTATGTGGTTGAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU28960 True 828 lncRNA 0.36 1 2194407 2195234

Neighbor

gene id symbol gene type direction distance location
CI01000004_02137991_02139934 NA coding downstream 54473 2137366 ~ 2140890 (-)
CI01000004_02074726_02085013 NMUR1B coding downstream 109303 2074485 ~ 2085104 (-)
CI01000004_02066165_02067630 NA coding downstream 126509 2066165 ~ 2067898 (-)
CI01000004_02027672_02032165 PFN2, PFN2L coding downstream 162242 2027425 ~ 2032165 (-)
CI01000004_02019772_02021213 NA coding downstream 173194 2019639 ~ 2021213 (-)
CI01000004_02198207_02227474 PRKAG2A, PRKAG2B, PRKAG2 coding upstream 2350 2197584 ~ 2227474 (-)
CI01000004_02245903_02355814 KMT2CB coding upstream 50669 2245903 ~ 2356190 (-)
CI01000004_02458156_02458869 NA coding upstream 262561 2457795 ~ 2458962 (-)
CI01000004_02571511_02598869 ARHGAP21B coding upstream 376077 2571311 ~ 2600082 (-)
CI01000004_02608555_02621378 NA coding upstream 412929 2608163 ~ 2621378 (-)
G25657 NA non-coding downstream 71163 2115454 ~ 2123244 (-)
G25676 NA non-coding downstream 120381 2073733 ~ 2074026 (-)
G25640 NA non-coding downstream 175798 2016257 ~ 2018609 (-)
G25642 NA non-coding downstream 250296 1937199 ~ 1944111 (-)
G25648 NA non-coding upstream 42795 2238029 ~ 2240154 (-)
G25862 NA non-coding upstream 211850 2407084 ~ 2407355 (-)
G26529 NA non-coding upstream 221657 2416891 ~ 2418656 (-)
G26538 NA non-coding upstream 250371 2445605 ~ 2445812 (-)
G26541 NA non-coding upstream 256635 2451869 ~ 2452085 (-)
CI01000004_01773383_01774888 INSL5B other downstream 419466 1772928 ~ 1774942 (-)
G26788 NA other upstream 1079199 3267683 ~ 3275721 (-)
G27746 NA other upstream 2982993 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 3425149 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 4339593 6538904 ~ 6541252 (-)
G29388 NA other upstream 4436059 6631293 ~ 6631907 (-)

Expression


Co-expression Network