chchd4b (LOC107711045,LOC107673517,LOC107580698)


Basic Information

Item Value
gene id chchd4b
gene name LOC107711045,LOC107673517,LOC107580698
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19620157 ~ 19621083 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241808.1
GAAAAAGGTCTCATCTTGCCGGGTGGTAAGATAAATTGGGACTGTCCGTGTTTAGGAGGGATGGCAAGTGGAGTTTGTGGAGAGCAGTTTAAGACTGCATTCACCTGCTTCCACTTTAGTCAAGAAGAGGTGAAGGGTTCGGACTGTCTGGAGCAATTCAGTAGCATGCAGGAGTGTTTTCGTCAACATCCTGAAGTCTTTGCTCAAGAAGATAATCCTCAGAGTGCCAATCCTGGATCTGAAGCAGAACAAAAAGACTCCCCTTCCATCTCTGACTTCAACTCAAGCAAAGAGTCTGACCCTCCGCCCACTGAGACAAATGATATGCCCTCACAGCTGCCCGTAGCTAGTTAAAATTGGAGAACAACCAATTTCTTAttccacttttttgttttactttaatatattaatataaaatgagacATAAAGGAAACGGGGACACTACATGAATGCAAAAAGTAAGATTAAatggatatatatttttttaatcaacatgaCATCCTGAAATATATAATGTGATCTTAAACATGGCAAGACATTGAGTAAAAGGAATCATATATAGAATATAGGTTTTTGTTGAACTCTCTCACTTAAAGTGTGTTCtgaaaatttcatatttaaacattttgtgttctgtctgtcttttactcctttttcatattttctattttgttcaTACAGTCACCTTAATCCAAGTGTAACTTTGTTACATATTgatgtgtgaaagtgtgtgatTTAAAGTCTACAAAGATTAATGTATGTCATACATTGTACTTGAGTGAGTGCAAGTATTTGTGTGTAAAACGTaggatattttgaataaaagttataaactcaa

Function

NR:

description
PREDICTED: mitochondrial intermembrane space import and assembly protein 40-B-like isoform X1

GO: NA

KEGG:

id description
K17782 MIA40, CHCHD4; mitochondrial intermembrane space import and assembly protein 40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241808.1 True 838 mRNA 0.36 2 19620157 19621083

Neighbor

gene id symbol gene type direction distance location
uroc1 uroc1 coding downstream 339 19613104 ~ 19619818 (-)
si:dkey-197j19.5 efcab12 coding downstream 7703 19609800 ~ 19612454 (-)
sumf1 sumf1,LOC107673603,LOC107585117 coding downstream 52115 19560562 ~ 19568042 (-)
myl6 myl6,zgc:153867,LOC107585121,LOC105013534,LOC108440770,LOC108271738 coding downstream 68300 19547029 ~ 19551857 (-)
pfkmb pfkmb,LOC107673583,LOC107711051,LOC107585122,LOC107582696,LOC107748387,LOC107667407 coding downstream 119072 19486992 ~ 19501085 (-)
sec61a1 sec61a1,LOC103023094,LOC108440718,LOC103358725,LOC108436273,LOC102228108,LOC107673516,LOC107384934,LOC106518493 coding upstream 1472 19622555 ~ 19627477 (-)
ip6k2b ip6k2b,LOC107585112,LOC107673575,LOC107711042,LOC107748392,LOC107582690,LOC107667389,LOC103024783 coding upstream 12096 19633179 ~ 19637946 (-)
trnaf-gaa NA coding upstream 45351 19666434 ~ 19666506 (-)
LOC122346467 LOC107711040,LOC107585110,LOC107748417,LOC107582687,LOC107667408,LOC107673450,LOC100332423 coding upstream 47785 19668868 ~ 19676080 (-)
col7a1 col7a1 coding upstream 56676 19677759 ~ 19736497 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 13101 19606362 ~ 19607056 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding downstream 222427 19393477 ~ 19397730 (-)
G46509 NA non-coding downstream 377346 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 468463 19149746 ~ 19151694 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding downstream 571321 19044628 ~ 19048836 (-)
G46658 NA non-coding upstream 170559 19791642 ~ 19792328 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding upstream 180160 19801243 ~ 19802266 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 212987 19834070 ~ 19838047 (-)
LOC122347207 NA non-coding upstream 256229 19877312 ~ 19880588 (-)
G46803 NA non-coding upstream 347163 19968246 ~ 19968460 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 64215 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 470426 19115061 ~ 19149731 (-)
G46478 NA other downstream 564026 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 902669 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 912561 18706623 ~ 18707596 (-)
tomm6 NA other upstream 220396 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 221961 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 278589 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 377549 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 474941 20096024 ~ 20102459 (-)

Expression


Co-expression Network