c1galt1b (c1galt1b,LOC107673577,LOC107711070,LOC107585137,LOC107733588,LOC107667385,LOC107579179)


Basic Information

Item Value
gene id c1galt1b
gene name c1galt1b,LOC107673577,LOC107711070,LOC107585137,LOC107733588,LOC107667385,LOC107579179
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19244648 ~ 19250690 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241812.1
GTTGAGAGAAAGGTTtagttgaaaatatttatttttcttttttcgaaACAAAAGCGACACAATTTAGTGCAAAGGGTGCGTGTCACTGTTCACGAGACAAAGTTTGACAGGGAGTAGTTCGGAAAAGGGTTGGCTAATTATAATACGGAACTGAACCGCCCCCATATCGCTCGGCTTTTACTTGGTGAACAACATTCAGTTCACAGGAAGAGATAGGAAGCACGTTGCTAGTTGGATTGAAATAAATCCTGATATTACCCCCTAAAGTGTATTTGTTTGGGCCAGAAAATAGCCAGGAGATGATTTTGAAGCCGATGTATCTGATTGGGCTGTCAGATTTCTTGATTTAAGTTGAAAAGCACAGCTATATTGTTATGCTAGCGCTCTGAGTTGGACTGAAATGGCCTCGGTGCCGAATCCTGCAGTTTTTCTCACTTCTGTTATGGAGGAATTAAGCGGCCTGTCGCTCTGAGGTGAGAGTCTCTACGTACGGAGCTCGTGATGAAAGCTCTCGGCGCGCGCTCCGCGTTCTACGTGGGCTTTGTGGTGGGCACGTGCACCCTGTACGTGCTCCTGCGTCAGGTTGGGTTCACGCGGAATGTGGGGTCTGTTGAGTCCGAAGCCCAAGAGAAAAGCCTACTGGAGATGATTGAAGAGGAAAACAAGAACTGGAAGAAGGAGAGGTCGGCTCTCTTCAACCTCAATCATCCTCACCATACAGGTGAGGATGGCACTCTCGCTGACGCTCTCTATAAGCGCGTACGCATTCTGTGTTGGGTCATGACCGGCCCCAATAACCTCGAAAAGAAAGCTCGGCACGTGAAAGCTACATGGAGTCGTCACTGCAACATTGTGGTCTTCATAAGCTCTGTGGACGACCCTGATTTTCCTACGGTTGGCCTAAACACCAAGGAAGGTCGAGATCAGCTGTACTGGAAAACCATTCGTGCTTTTCACTACGTCATGGAAAAGCACGGCGATGAGGCAGACTGGTTCCTCAAAGCGGATGACGACACTTACGTGGTCGTTGACAACCTGCGCTGGATTCTTGCCAGCCACTCTCCAGAGGACCCGTTGTATTTTGGCCGGAGGTTTAAGCCGTATGTAAAACAGGGTTACATGAGTGGCGGCGCTGGTTACGTGCTTAGCAAAGAGGCTCTGAGGAGGTTTGTGGAGGGCTTTCGCACCAAAGTGTGCACTCACACTAGCTCCGTGGAGGACCTAGCTCTGGGTCAGTGTATGGAAAAGATAGGCGTCGTGGCAGGAGACTCCAGAGACACTTTAGAAAGAGAGACATTCCATCCTTTTGTACCAGAGTCCCATCTCACTGGCACATTTCCTAAGACCTTCTGGTATTGGAACTACTGTTATTACCCCATTGTGCAGGGCCCACAGTGTTGCTCAGACCTGGCTGTTTCTTTCCACTATGTGGATGCTTCACACATGTACCTGCTGGAATACTACACTTACCACTTGCGTGCCTTTGGCTACAAATACCGCTATCAGGCCCCTGAGCCCAGTGTCATACAAGACTTAAATGCTCCAGCCCCCAAAGTGGAAATCGGAGACATAGAGGAAAATCTGGGGGCAAAAGTACAGGAAGCAGAAAAGAATTCCCACAAACATAATGAAAAGTTATAGCAGATATTTGCGTAGGAATTTTTACAAGTAACGTTTAAAATCTTCTTCCAAGTTTTTGGGATGGCTTTGTTTTTTGGATAATGTCTTAAAATATCTGTCTGTATTGTGCCACAGAAATGTGTGCATAACATGTTTGCGTGATTTAATGAACTGGTACATTTGGGCGTGTTCCTCATAACAATGCAATTGTATGTGAATGTTTTAATTGGACAGTGCAGAATTGTATGAAATGAAGGTTTGGACTTGTAGAGCGAGTATGTGGTTCTTCGGGGGTTGAGTGTGAGGAGCCTGCcttaatagtataataataacattggGTAATATTTTGGGGTGGGAAGCAAGGATGCCTCTGCATTCGTTATACTttgtgttaatttaaaaaaaaaaaaaagttctttatgTAAAAATGGGTTTGCTCTGCATTGTCGTGATAAACACACCACCATTTATGATTTAACGGCAATGCCATAAAAAAGGGGCCCTGTTTTTCCTCTTATATTCTCATTCCTTTGAATTAGTGCCTCTTCCCTGATCCAGAAAAATCATGCATTTCCAGCAAACTTTAAAGTGTTTTCTCTACACAGTGTACAAAATCTTTGCCAAAGTTGAACATGCACAATTTACTTTGACTAAGATTACTTCgaaataaatattaaccagGGCGTAGTCCTTTAGCTGAcaccaaaacagcatattaCGCTTCTCCGAAaggggttagttcacccaaaaataaaagttgtcaTCGTTTACTCTTCCCAAAGTtgcttcatatatattttattagaagaTATTACGCAGAATGTTCATTCTGGTAGCCATTTACTTgtatagaaaaagaaaatggaaaacaaaatggaGGTCAATGAATGACTACCAGCAATTGttttgttcttcaaaatatcttcctttgcgtTCATTGAAacagtttttgggtgaaccaccTCATTCGCAAGAATACGGATTAGTTCGATCCTGTTGGCTGGCCCAATAGTTCATGAGTGCCTGGGAAAGAAGTAAAGGTAGCAAGGTAGATAAGACGGTGTAagtacactgtttttttttttctccatgctAATGGGAATTGAGGTCTTGTAGACGACTGGTGTAGTGTAACACGCTGTGAAGCAATGCAGCTTGTGAGTTACTGAAACTGACCgcataatgctttatttaattgtttgtagagtgaaggtttttgtttatctgGGATTGAATGTCTAGGTTTTGCTTCAGTTCACAATGCAACTCCTATTGCGCGTGAGATTAGGCATGTTGATTTTGAAGTTGATATAGCTGCTTGTCCAGGGTGGTGAAATTGATTCCGTTTCTCGTGGTGTGTGCTTTATGTCTGAATTactcaattatttgtttgtatttgctgtatttaaagggatagtacgatcaaaaatgaaagctctatcaattactcaccctcatgtcgttccaaacctgacTATATTTTCAAGACAAATAAAGATATGTATTCTTTTTTGATGA

Function

NR:

description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016266 O-glycan processing biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241812.1 True 3138 mRNA 0.43 4 19244648 19250690

Neighbor

gene id symbol gene type direction distance location
apof LOC107711072,LOC107585209,LOC107673462 coding downstream 7831 19233271 ~ 19236817 (-)
stat2 LOC107673542,LOC107711071,LOC107585138,LOC107667368,LOC107733592,LOC107582712 coding downstream 11849 19221293 ~ 19232799 (-)
LOC122347293 LOC107711003,LOC107667371,LOC107585181,LOC107673453,LOC107711002 coding downstream 54139 19188495 ~ 19190509 (-)
eif4bb eif4bb,LOC107673526,LOC107711078,LOC107585139,LOC107582715,LOC107733597 coding downstream 57221 19175866 ~ 19187427 (-)
tns2b LOC107711076,LOC107673525,LOC107585141 coding downstream 71477 19153039 ~ 19173171 (-)
os9 os9,LOC107711069,LOC107585136,LOC107667395,LOC107582707,LOC107733587,LOC107673576 coding upstream 843 19251533 ~ 19260149 (-)
arhgef25b LOC107673520,LOC107711023,LOC107585132,LOC107582829,LOC107733583 coding upstream 23427 19274117 ~ 19286211 (-)
krt4 krt4,LOC107711067,LOC107667388,LOC107585134,LOC107673521,LOC107582705 coding upstream 47201 19297891 ~ 19302750 (-)
zgc:158846 zgc:158846,LOC107711021,LOC107585206 coding upstream 66887 19317577 ~ 19321542 (-)
scn8ab scn8ab,LOC107667357,LOC107673511,LOC107582701,LOC107585129 coding upstream 91403 19342093 ~ 19390664 (-)
G46509 NA non-coding downstream 1837 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 92954 19149746 ~ 19151694 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding downstream 195812 19044628 ~ 19048836 (-)
G46476 NA non-coding downstream 200779 19043616 ~ 19043869 (-)
G46463 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 non-coding downstream 272278 18970170 ~ 18972370 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding upstream 142787 19393477 ~ 19397730 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding upstream 355672 19606362 ~ 19607056 (-)
G46658 NA non-coding upstream 540952 19791642 ~ 19792328 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding upstream 550553 19801243 ~ 19802266 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 583380 19834070 ~ 19838047 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 94917 19115061 ~ 19149731 (-)
G46478 NA other downstream 188517 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 527160 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 537052 18706623 ~ 18707596 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 599514 18644306 ~ 18645134 (-)
tsfm tsfm,LOC107711018,LOC107585120 other upstream 302627 19553317 ~ 19555942 (-)
tomm6 NA other upstream 590789 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 592354 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 648982 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 747942 19998632 ~ 20000638 (-)

Expression


Co-expression Network