cfap100 (cfap100,LOC107562886,LOC107691496)


Basic Information

Item Value
gene id cfap100
gene name cfap100,LOC107562886,LOC107691496
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8431444 ~ 8439385 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241829.1
tGTCATCAAACTGGCTCTTGCCAGCAGCTTTACTCGTTGTGATCTTTCCGGAGGTTTAGATGTTAAAAGGTCATTCAGTTCTAAAAACCAATACTTTACAAACTCTCTCGATATTTTACATAAAGACACCGAGACTTGAAACAGTCCAGGACAAACCAGGAGTCCCTACAGAAGTTAAATAGTTATTCGCCTCAGGAGCAACATGTCCTCACCTCAATCATCAGCACACAAAAGCAGTGATGATGTGAACCCATTTAAAATCCCCGAACACCACGATCTTTTCCAGATGAGGGACAAAGAGAAATCTCACAGGAAGCTGGAGCACCAAAGTAAGTTGGCTTTATCTGCCCATGAGAAGATGACATTTGCAGGCAGAACAAGGTCAGGACAAACCAGACTGAAGAAGGAACTGAAAGAGGAGAGAAACATACCAGTGACACAGACTCATGGACAACTCCAACTGACTCCCGCATGGAGGGTATCTATGAAAGACCATAATGTTGAAAAGGGAGGCATGAATGAATATATCACAAGGAAACGTGAGCTCTTTTTACTTGAGTATTCTCTGGCAGTAAAAAAAGGAGAGATTCAACTACTGGAACAAATGGCTGCAGAAGAAGAGGCGAAATTGACAAAAGCTGAGAAGTTCTTGGAAGATGATGCCATCTTGTTTGAAGAATTcctaaaagaaaatgacaagaATTCGGTGGAAGCTATCAAAATTGCTGAGCAGGAGACCAAGGTGAAGCTGGAGAAAGTAGCTGAGATCAAGAAGATAACTTCCAAAATGGTTGCAGTCAAAAGCGACATCTCTAAATATGAGGACATCCTGAAggagtataaaaaatataaagagttTCTGCTTATGCTGTCACCTCCGGAATGGCAGGAGAAACAGATTTCCAAGAGTAGGCACTCTACTGTCTCCACAAGTACTAAGAGGGATGAAAAACAGGCAGAAACAATCCaaaagagcaaagaaagaaagacagcagAAGGCAGCAAGCGTGGAGAAAGACGAGTGGCCCGTGGTTTCTTGTCTTCTCAGGAGGCCGGGGCTTCATCTAGACAAAGTGTGAAGTCCAGCCATCAGAGCAGCAAAATATCTGCTCCTGGGACTGACAGCTCGGATTGTGAGGAGGACCCAGAGATGTTCTTCAAAGAACCGCAGGATCTTTTGAATCTAATGACTGAACTGGAAGAGCAGAACCTTTCTCTCATCCAAAACACTAGAGAGACAGAAGAAGCTTTGGAGGAGTTCAGACAGAATGCTGAACTGACTCAAAAAAACATGGAGTCTGAATCAAAGCAGCTAAAAGAGCAGATTGATATCATGACTGATACCATTCAGAGGGAGAAAGACAGAGCAGCAGAGCTGGAAGCGAAAGCCAAAATGTTCAGCTTTGAACAGTACAAACCAGAGGACCAGGACAAGACTCTTGACGCATTGAGCCGAAAGGTGGAGGAGGTGTACCACTGCTGCGTGGGGGAGACGGAGGCCAATCTGACCACTTTGCAGATGCTGACAGCCATTGAGGAAAAACTGGGGGAGCTTCTGGAAAATGCAGATATGATTCCAAAAGACCAAATGAGTATAGCTGAACGTgccaaagagaaagagaggagaatgAGGCTGCGCGATGAGAAGATATATTTGCAGATGAAACAACAAgaggaaagacagaaaaaagccCTGGAAAGATCTCAggctcaaataaaaaaaacatcTGTCAAGAAGCTGATGCCACGCTCTCAGCCTCCTCAGCGCAAACAACAGGCAAGCAAAAACACTGAAGCTACAGAACGGGAGAACGAAGAATTCTTGTATTTCCTCAGTTAAAAGAAGCATGTTGATATTTGAATgtgaatacaaatgtatttttgtagaaaaGGATGGAAATTATACTTAATGTCACCTGTTTTTTTCAGGACATAAATgttaatgaatgcatgaatcAAATATGCAAAGATCTCTCAAAACTCAACTATAAAAGGACACAAACTACAGAGACTACgtatgatttaaatgtaaaattttattaaccTGTTCTGACGTAAACCAAAcctaataaatacatttcagctgca

Function

symbol description
cfap100 Orthologous to human CFAP100 (cilia and flagella associated protein 100) and CCDC38 (coiled-coil domain containing 38).

NR:

description
cilia- and flagella-associated protein 100-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241829.1 True 2088 mRNA 0.42 14 8431444 8439385

Neighbor

gene id symbol gene type direction distance location
plxnb1b LOC107755667,LOC107586348,LOC107656121,LOC107691484 coding downstream 13674 8381140 ~ 8417770 (-)
si:dkey-19e4.5 si:dkey-19e4.5,LOC107586347,LOC107562898,LOC107710172,LOC103025619,LOC108427613,LOC108272187 coding downstream 52403 8374812 ~ 8379041 (-)
setd5 LOC107710169,LOC107716898,LOC107656119 coding downstream 56769 8346761 ~ 8374675 (-)
mtmr14 mtmr14,LOC107716897,LOC107710166,LOC107569464 coding downstream 125857 8295300 ~ 8305587 (-)
si:dkey-43k4.5 si:dkey-43k4.5,LOC107716889,LOC107586377,LOC107688900,LOC107569460,LOC107710151,LOC107694904 coding downstream 149360 8254037 ~ 8282084 (-)
gga1 gga1,LOC107712552,LOC107656124,LOC107586353,LOC107710174,LOC107691488 coding upstream 27353 8466738 ~ 8479836 (-)
nprl2 nprl2 coding upstream 57250 8496635 ~ 8501268 (-)
LOC122346602 NA coding upstream 67383 8506768 ~ 8524993 (-)
si:dkey-45d16.4 si:dkey-45d16.4,LOC107681484,LOC107569613,LOC107711600,LOC108424794,LOC103024355,LOC108273264 coding upstream 107893 8547278 ~ 8549239 (-)
ube2o ube2o,LOC100331775 coding upstream 418149 8857534 ~ 8883164 (-)
G43700 NA non-coding downstream 87930 8334362 ~ 8343514 (-)
G43697 NA non-coding downstream 116821 8314423 ~ 8314623 (-)
G43691 NA non-coding downstream 137158 8294054 ~ 8294286 (-)
G43660 NA non-coding downstream 248562 8182679 ~ 8182882 (-)
G43513 LOC107688815 non-coding downstream 380766 8049397 ~ 8050678 (-)
G43709 NA non-coding upstream 9753 8449138 ~ 8450686 (-)
G43712 NA non-coding upstream 11402 8450787 ~ 8452319 (-)
G43710 NA non-coding upstream 14746 8454131 ~ 8454863 (-)
G43719 LOC108424762,LOC107710154,LOC107562891,LOC556764 non-coding upstream 21521 8460906 ~ 8466646 (-)
G43734 NA non-coding upstream 56379 8495764 ~ 8496633 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 383436 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 660993 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 845077 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 1101879 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 1116670 7274840 ~ 7314774 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 269321 8708706 ~ 8713858 (-)
G43890 NA other upstream 821231 9260616 ~ 9261245 (-)
G43896 NA other upstream 826617 9266002 ~ 9267324 (-)
G43899 NA other upstream 829803 9269188 ~ 9270922 (-)
G43900 NA other upstream 832033 9271418 ~ 9272305 (-)

Expression


Co-expression Network