si:dkey-195m11.11


Basic Information

Item Value
gene id si:dkey-195m11.11
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19292646 ~ 19297765 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241838.1
GTTAGTTAATGTTACTGTTGCACCATTTGgaaatttcaaatgttttgatgtGGATTTAAGCACTTTTCATTCTTACTGTGTCACAGTTTCAGTTGCTGGTTTCAAGATGATTATCCACAACACAGGAGTGCTATCTGTGGTGTGCTGGCTAATGCATGTGAGAGAAACGGTGTCTCAGGCATATGCTCCAGCGCCTACACTCAGGTATGAttttggagaaaaagaaaataatgagcTAAACTACATAGTAAATGTTGTTTGTGCTACCCCTCGGAGTGCTTCATATCCCGTAACTGTGTCTGTGGGCAAGTTGGAAAGCCCCTCACAGACCCCAGAAACCACAGAAGCCTGGGTGACCTCTAATGTCGTCAAACAAGCGGAGTCCACATATTTTACGATCCCTGCAACAGCCAAGTTTGAAGGAAAAATTGTGTGCTGGTACAAATCCACTCAGACTGATTCAAAGAATCCCTATTCTGCATTAAGCAACAATATTACCTTAGTCGTATCATCCCTCACTTCTCCCACAGTGACCGTGCACccaaatgtatttatgattgGTCAAAATTACACTGTACAATGTGACTCAGCCTACAGCCTCCCAAACATCACACTGAGTCTGTATTACCGCCCTGTCACCCCTGGATCCAACTGGACTTTGGTTGGTTCACTATTTCTCACGAATAACACTTCAATCATTTTAAGACAGACTAATGCCGTTGAACCAGTAGAATTCGCCTGCTCAATGGAGATGATGTACAATGGAAAAGTCTTACATTCATCTCTGTCTAAAAGCGAGCAAGCCATCCCAGAAAAGTTTCTGGTTCGACTCTGGGAACAGTCACGGGGAGAGAGCTGTCTAGGATTTCTGGATGTCACAATCAAAGGGAAGTGGGAACCTGTTTGTCAGAAGGAAGTCGATACCGATGCAGATTCGTCTTCCGCTGCCGCCACGGCTGAAGTGGTATGCAGGCAACTGGGCTGTGGGTCTGTGCTGAAGTGGGATAGGCTTTGGGATGACAAACGGCTGTTTGCAACAACAGTCGGGGGCATCAGATGCagtgggaaagaaaaaaagatcatgGATTGTCCAGTGAAGGAAATTGGAGATTGCAAACAGAGAGGCATGCTCTATATAATTTGCTCAGATGCATTGCCCCGACCAGAACTGTCTGTGGATATGTCTGTTTCTCCTAACTCCAGAATGTATGTCACGGACAAACAAGATGTGAAAATCTCCTGCTCTACCTACTCAACTTATTTAAAATCAGTAGACTATGGGTACACAGTGCTTAAAAAGGATGGTGTTCATGTGACTGAAACGTACAGCAAACCAGGCTCAACTGTGTCTTTCACACAGCATGCCCCAGTGCCTGAAGGAGAGTATGAATGTTTTTTCCATCTTACGTCTTCAAAAATTAAACTGTCTCAACCAAGCAATTCAGTCTTCATTTACATATACAATCCTCCAGATCCAGTGCCAATTGTAGCAGGTGTTCTCACAACTGCTTTTGGGTTAGCAATTCtagtgtatatttgtatatttagaaCCGCCACAGAAGAGGTACAGGCCAATGAATTTCCACAGACCAATACTGAAAATCCAGATAACAATGCCAGCTACCCACCACAGCAACTTGAAGGCAAAGAAGTTTAATTTATGGCTGAAAATATGTTTAACCATATGCTTCAACATGTTAACATGTCATCTGGACAACATTCCACATGAAATATAAGGTTTGATAAATCTTGAAGAAAAGACAATCAATGCTTTTTGCAATTCTGTACAATAGAGAATATTTAGATATCAAagttataatgttaaaaaacgaACTAACCTAGTtttacaaaagcattaaaaataagagtCTGTTAGTATACTAGTTAGTCTGCAAGATGTTCAATATAAAGTGAGTCAACTTTACGGTGGAGTGAATCAAACTTCattctaattaataaatgtatctgTTTTACCTA

Function

NR:

description
uncharacterized protein LOC110493957

GO: NA

KEGG:

id description
ko00601 Glycosphingolipid biosynthesis - lacto and neolacto series

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241838.1 True 1977 mRNA 0.41 8 19292646 19297765

Neighbor

gene id symbol gene type direction distance location
ankrd33ab LOC107711022,LOC107582706,LOC107585135,LOC107667328 coding upstream 1779 19288427 ~ 19290867 (+)
b4galnt1b b4galnt1b,LOC107673615,LOC107667298,LOC107711068,LOC107585207,LOC107733607,LOC107582708 coding upstream 17383 19261579 ~ 19275263 (+)
tac3b NA coding upstream 49217 19240813 ~ 19243429 (+)
gpr84 gpr84,LOC107711075,LOC107585210,LOC107582713,LOC107733593,LOC107682832 coding upstream 73620 19215804 ~ 19219026 (+)
LOC122347426 LOC107585140,LOC107733596,LOC107667370,LOC107673453,LOC107582714,LOC107733594,LOC107711002,LOC107667371,LOC107585181,LOC107582832 coding upstream 79260 19208664 ~ 19213386 (+)
krt18b zgc:77517,LOC107585131,LOC107673602,LOC107711062,LOC107733602,LOC107667394,LOC107582704 coding downstream 30754 19328519 ~ 19332524 (+)
LOC122346460 mettl7a,LOC107585130,LOC107711020,LOC107667380,LOC107740572,LOC107673452,LOC107711000,LOC107580767 coding downstream 95687 19393452 ~ 19395355 (+)
LOC122346461 LOC107711020,LOC107667380,LOC107740572,LOC107585130,LOC107673452,LOC107711000,LOC107580767 coding downstream 98872 19396637 ~ 19398441 (+)
c1ql4b c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC107748412,LOC107667333 coding downstream 222526 19520291 ~ 19530863 (+)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388,LOC107582794,LOC107673598 coding downstream 234569 19532334 ~ 19545874 (+)
G46305 NA non-coding upstream 62205 19229796 ~ 19230441 (+)
G46265 NA non-coding upstream 69360 19221292 ~ 19223286 (+)
trnaq-uug_14 NA non-coding upstream 140473 19152102 ~ 19152173 (+)
G46272 LOC107585146,LOC107711077,LOC107673565,LOC107733590,LOC107667372,LOC107582718 non-coding upstream 159043 19118052 ~ 19133603 (+)
G46275 NA non-coding upstream 236515 19055216 ~ 19056131 (+)
G46299 NA non-coding downstream 2630 19300395 ~ 19303013 (+)
G46347 NA non-coding downstream 87841 19385606 ~ 19454365 (+)
G46353 dip2bb,LOC107740567,LOC106565592 non-coding downstream 106700 19404465 ~ 19407876 (+)
G46355 NA non-coding downstream 110983 19408748 ~ 19409488 (+)
G46362 NA non-coding downstream 139984 19437749 ~ 19463096 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other upstream 675688 18577178 ~ 18616958 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other upstream 1126404 18156655 ~ 18166242 (+)
G46022 NA other upstream 1295929 17995191 ~ 17996717 (+)
G45894 NA other upstream 2105338 17186708 ~ 17187308 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 3725978 15564981 ~ 15566668 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 268246 19566011 ~ 19594008 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other downstream 486412 19784177 ~ 19786297 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other downstream 545282 19843047 ~ 19846548 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other downstream 568794 19866559 ~ 19873535 (+)
G46742 NA other downstream 789326 20087091 ~ 20095641 (+)

Expression


Co-expression Network