krt4 (krt4,LOC107711067,LOC107667388,LOC107585134,LOC107673521,LOC107582705)


Basic Information

Item Value
gene id krt4
gene name krt4,LOC107711067,LOC107667388,LOC107585134,LOC107673521,LOC107582705
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19297891 ~ 19302750 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241839.1
agagagacacacagagggACTTTGACTCTCCTTTGTGAGCAACCTCCTCCACTCCTCTCTCAGAGAGCACTCTCGTACCTCCTTCTCAGCAACTCAAAGACACAGGCACCATGGCAAGCACCAGGTCTATCAGCTACAACATCGGTGGCAGCACTGGCTCCATGAGGAAATCTGGCTACTCCAGCCAGTCAGCTTATGCTCCCGGCAGCTCTAGCAGGGTCAGCACCGTGACCAGCGTCAGGAGATCTGGCGTGGGTGCCGGTCCAGGCTTCGGTGCAGGATTCGGTTCTGGAGGCAGCAGCTTTggcttcagcagcagcagcatgagTGGAGGCTACGGTGGTGGTCTTGGTGGTGGTCTTGGTGGAGGTATCGGCGGTGGCTTCATTGCACCTCCCATCACCGCTGTAACAGTCAATCAGAGCCTGTTGGCCCCCCTCAACCTGGAAATTGACCCCACGATTCAGGCTGTCCGCAATCAGGAGAAAGAGCAGATCAAGACCCTCAACAACCGCTTCGCTTCCTTCATCGATAAAGTGCGTTTCCTGGAACAGCAGAACAAGATGCTGGAGACTAAGTGGAGTCTCCTCCAGGAACAGACCACCACCCGCTCCAACATCGATGCTATGTTTGAGGCCTACATTGCTAACCTGCGCAGACAGCTCGATGGCCTGGGAAATGAGAAGATTAAGCTGGAAGGAGAGCTGAAGAACATGCAAGGCCTGGTTGAGGACTTCAAGAACAAGTACGAAGATGAGATCAATAAGCGTGCTTCAGTAGAGAATGAGTTTGTTCTGCTCAAGAAGgATGTTGATGCAGCCTACATGAACAAGGTCGAGCTTGAGGCCAAGGTCGATGCTCTTCAGGATGAGATCAACTTCCTCAGAGCAGTCTATGAGGCTGAACTGCGTGAGCTCCAGTCACAGATTAAGGACACATCAGTCATTGTGGAGATGGACAACAGCAGAAACCTGGACATGGACGCCATTGTGGCTGAAGTTCGTGCTCAGTATGAGGACATCGCCAACCGCAGCCGTGCTGAAGCAGAGAGCTGGTACAAACAGAAGTTTGAGGAGATGCAGTCCTCTGCTGGTCAGTATGGTGAGGACCTCCGCTCAACCAAGGCTGAGATTGCAGAACTCAACCGCATGATTGCCCGCCTGCAGAACGAGATTGATGCCGTCAAGGGACAGCGTGCCAACTTGGAGGCTCAGATCGCTGAGGCTGAGGAGCGTGGAGAGATGGCAGTGAAGGATGCCAAGCTCCGCATTAGAGACCTTGAGGAAGCCCTCCAGAGGGCTAAGCAAGACATGGCCCGCCAGGTGCGCGAGTACCAGGAGCTCATGAACGTCAAACTGGCTCTGGACATTGAGATCGCCACATACAGAAAGCTGCTGGAAGGAGAGGAGAGCAGACTGTCCAGCGGTGGAGCTTCAGCTACCATTCATGTGCAGCAGTCTTCTGGTGTCTCATCCgGTTTCTCTGGTAGCAGCTCTGGATTCGGCTATGGCGGAAGTTACGGTGGCTCTTCAGGATTTGGTGCTGGATCAGGATATGGCGGAGGTTCCATCAGCAAAACCAGCGTCACCACTGTCAGCAGTAAACGCTTTTAAAGAGAAGCACCCCCAACCCAACCCATCCCGGCATCCTATTTTCCTTACCTGCAACTAGATCACTCTGAACCTTCTTACAACTCAAACCATCTATGGTGCTATATTCTAGCCAGACAGCTATCCCCTGTTAATGAGGAGATGAGGACAATGATTtcttaaacacaaattaagtttTAGGTTGCTCTGTGTGTTGAGGGTAGTTACAGCAAAACATGCATCTCTTCTCTGGTGGCATCACTGCCATATTAAGTCAAATCAACCCAActacactaaaataacaccagAAAGAATGTAACAGAGAATATGTGCTCCCAGTCactgaattgttttatttctgcacTGATATGTATAGGGAAAGTGAGACTTGAATgcaatatatacacatagaaaCCACTGAAGCCAATTAGGCCCTTCACAACAATTGGATTTCAGTCTCATTAGCATAACCACAAGCAGTACTATGGTTTCACTGGATCAGGGATGTGCTATACAGGTCCTGAAAGTCCTGGTTGAATGTTTTGTGCTGTTTCAAGCTCCCTGCTGTATTTCTGCTGACGAATATGACTTTATGCAATGGCTGTCAGTGTTAGTTTACCTATCTGCTATAAAAAGTACAATGCTGTACTCGGCCTATAACTGATGGCAGTGACTTGTGGGCTTCCAATGTCCAGTTACCTCACATTCTAGGGAGATCTGTTACAGCAAAAAACAGGCACAATGGCATTTCCATGGACCATCCCTCCTAAACTGTGTGTACTTGCTGACTTGAAAGCAGAGAGCTGCATTTACTGTGTGGTGACTGTACTACCTTATACTTTCCCCTTTATTCAAACTGCTTCCAGAGCGTATTTTACAGCCCCTGTTATAAATGGAAAAGTGCAACAAAAATGAAACCATGTTCAACcagatttattttgtattgattGACTTGACACCAACTTAAATCTGAATACAATAAATCTGAGACTACAA

Function

symbol description
krt4 Predicted to be located in keratin filament. Is expressed in several structures, including EVL; ectoderm; endocrine system; integument; and pharynx. Human ortholog(s) of this gene implicated in several diseases, including Meesmann corneal dystrophy 2; epidermolytic hyperkeratosis; hereditary mucosal leukokeratosis; ichthyosis (multiple); and palmoplantar keratosis (multiple). Orthologous to several human genes including KRT8 (keratin 8).

NR:

description
PREDICTED: intermediate filament protein ON3-like isoform X1

GO:

id name namespace
GO:0045095 keratin filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07605 KRT2; type II keratin, basic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241839.1 True 2585 mRNA 0.49 9 19297891 19302750

Neighbor

gene id symbol gene type direction distance location
arhgef25b LOC107673520,LOC107711023,LOC107585132,LOC107582829,LOC107733583 coding downstream 11680 19274117 ~ 19286211 (-)
os9 os9,LOC107711069,LOC107585136,LOC107667395,LOC107582707,LOC107733587,LOC107673576 coding downstream 37742 19251533 ~ 19260149 (-)
c1galt1b c1galt1b,LOC107673577,LOC107711070,LOC107585137,LOC107733588,LOC107667385,LOC107579179 coding downstream 47201 19244648 ~ 19250690 (-)
apof LOC107711072,LOC107585209,LOC107673462 coding downstream 61074 19233271 ~ 19236817 (-)
stat2 LOC107673542,LOC107711071,LOC107585138,LOC107667368,LOC107733592,LOC107582712 coding downstream 65092 19221293 ~ 19232799 (-)
zgc:158846 zgc:158846,LOC107711021,LOC107585206 coding upstream 14827 19317577 ~ 19321542 (-)
scn8ab scn8ab,LOC107667357,LOC107673511,LOC107582701,LOC107585129 coding upstream 39343 19342093 ~ 19390664 (-)
atf1 atf1,LOC107740571,LOC107582700,LOC107667378,LOC107673536,LOC107585126,LOC108271751 coding upstream 96106 19398856 ~ 19404013 (-)
dip2bb dip2bb,LOC107673535,LOC107740567,LOC107711059 coding upstream 101717 19404467 ~ 19434213 (-)
atf7b atf7b,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698 coding upstream 132431 19435181 ~ 19444611 (-)
G46509 NA non-coding downstream 55080 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 146197 19149746 ~ 19151694 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding downstream 249055 19044628 ~ 19048836 (-)
G46476 NA non-coding downstream 254022 19043616 ~ 19043869 (-)
G46463 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 non-coding downstream 325521 18970170 ~ 18972370 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding upstream 90727 19393477 ~ 19397730 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding upstream 303612 19606362 ~ 19607056 (-)
G46658 NA non-coding upstream 488892 19791642 ~ 19792328 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding upstream 498493 19801243 ~ 19802266 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 531320 19834070 ~ 19838047 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 148160 19115061 ~ 19149731 (-)
G46478 NA other downstream 241760 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 580403 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 590295 18706623 ~ 18707596 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 652757 18644306 ~ 18645134 (-)
tsfm tsfm,LOC107711018,LOC107585120 other upstream 250567 19553317 ~ 19555942 (-)
tomm6 NA other upstream 538729 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 540294 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 596922 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 695882 19998632 ~ 20000638 (-)

Expression


Co-expression Network