slc19a2 (slc19a2,LOC107586324)


Basic Information

Item Value
gene id slc19a2
gene name slc19a2,LOC107586324
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7254864 ~ 7260771 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241865.1
GTCACTCTCCCGCGCCGCTTGTCCTTTTGACTTGAGTTTAAATCGTTGAGGGAGAGCTTTATTGCAAAATGTTCCTGCGTTGTTCGTAGCAAGAAGGTCACTTGGCGCAAGCGAGTATGTCTGAGCCATGGCTTTACCCCACCATCCTGCTATGTATTTATGGGTTTTTCTGCAGCCACAGACCACTGGAACCCTTTCTAACCCCGTTTTTGATGGGACCTGAGAAAAACCTGACGGAGACAGAGGTCGTGAGTGAGATCTATCCTTTTTGGACGTATTCCTACCTCGTGCTGCTTTTCCCGGTTTTCCTGGCCACAGATTACGTCCGGTACAAACCTGTGCTGATTGTCCAGGCGGCCAGCTTCATCGTGACCTATGCTTTGCTCTTGAAGGCCCAGAGTGTGAAAGCCATGCAGTTATTGGAGTTCTTTTTCGGTCTGGCAACTGCCACTGAAGTTGCCTACTACTCCTACATCTACAGTGTGGTGGAGCCATCTCATTATCAGAGGGCGACCGGTTTTTGTCGCAGTGTCACACTGTTGGGCTCAGCGATCGGCTCGCTCATTGGACAGATTCTGGTGTCTGTAGCCCAGGTGCCTCTGTTTTACTTGGGCGTCATCACACTGGTGTCCTCCTGCATAGCCTTTGTTGCCCCTTGGTTCCTACCCATGCCCAGTAAGAGCCTGTTCTTTCATCACAGAGAGAGCTGCTCTCAGGATGAAGGAGCTTTGGAGCCCATTAACGGCAGTCAGCTGATCGAGAAACCAGAGGATCCAGAGTCCAAAATACAGCTTAGTGCAAACGAAAAAACGACTCTCAAGAAGAATATTAGCAGTAGTGGATTCCTGGAGGTTTTAAAAACGCTGTGGTCAGACTTCCTTGAGTGTTACTCCTGCTCTACCCTGTTGGCCTGGTCAGTGTGGTGGGCTTTATCCACGTGTGGTTACCTCCAGGTGATTAATTATGCTCAAGCGCTGTGGCAGAAAATCTTGCCTTCCAATGACTTTGAGATCTACAATGGATACGTGGAGACCGTTTCTACCTTGCTTGGCGCTTTAACAGCATTTGCTGTAGGCTTTCTAAAAGTGTCCTGGGCAGTGTGGGGAGAGCTTgctctctgtgttttctctgtggtAATAGCAGCGTGTGTGTACCTCATGGACACCATCAGAAATATCTGGGTTTGCTACACTTCCTACATGCTCTTCAGAGCTACCTACATGCTTCTTATCACCATAGCAACgTATCAGATAGCTGCTAACCTAAGCATGAGAAGATACGCTTTAGTTTTTGGAGTAAATACTTTCATCGCACTCTTACTGCAGACGACTCTTACCGTGATCGTAGTAGATTCTGCCGGTCTAGGCCTGGACATTTTTCTACAGTTTCTGATCTATGCAAGTTACTTTGCTGTAATAGCTGTGATATTCTTGATTGCCTGGCTGTATAAGTGGTTTAAAAGAAGGGGGCCTGAAGGACAGAATGAATTGCCCTCAACAGAAACGATTCCAGaggcttgaaaaaaaaaaacaaatcttccGTTCAACTCAATGGATAGGTCAAAATAACTGCTTCTAAAGAGAATGCAGCATCTCAAATTCAGAGACTCAGTTTTGAAGGTTATAAAAGCACTGGTGATTTTTGATAACAGTTAATAGTTATACACTGTAAGTTGTTGTAGAACGAAATGcacttgttttaatgtttcattcacATCATTATGATGCCTTACTTCACTGTTAGTTGAATCGAAGCAGGTCAGAATAAGTAGGCTGACTTTTTAAGCCAACACTATCATGTTATGAATATTATGAACTTTATAAGCGCTTGTTAAAATCGGccgtctttttttgttttaccgCTGAAACATTAGCAGAGTTATGGTACTTCCACTACAAATGATCTTTTTTCACACACACGACAGCACAAATGtgattgtgatatttttatacaaCTGTTTTATCAGGAAAAAAGATGATGGTATATAACATTTCGTTTCTTTATTTGTGGTCTGTCGAGAAAAGTAGCTCCGAAAGAAGCGATGAAACCATCGTTTTTCCTCTTTGTGCAACCCAAAAGTAGTATGATTTTGttggaaaaaaagattaattgacCAAATCAAACAGACATTCTTGTTATCAATCAAATCCGAGGAACAAAACTAATGTTGTATAACTTTGCAACGGTTTATCTTGCTGCGCTGCTGGccttaaatgataaaatatctaaaagtatAAGTGGCCTTAGTTTTGTTGGTCATTCCATCTCTTTTATTGGCCgcactttatttttactactATTTCTGTCCCAAgtttttatttgctgcttattaatatttagtaaggtagttaagtttagggaTAGGTAGGATCAAGTGATCCAATACATTCTTATATCAGCcagtgttttaattaataatgacaatTGGTCCttggaaaaaaagtgttaccatcttatttaatgcatttatttaaaaaaggcactGAATTTACAAATAAAGATGAAGGCTTTTGTGTGCTTACTGAA
>XM_043241866.1
GCTTTACCCCACCATCCTGCTATGTATTTATGGGTTTTTCTGCAGCCACAGACCACTGGAACCCTTTCTAACCCCGTTTTTGATGGGACCTGAGAAAAACCTGACGGAGACAGAGGTAAATGTGCTTGAAGGGTGATGTCGTGAGTGAGATCTATCCTTTTTGGACGTATTCCTACCTCGTGCTGCTTTTCCCGGTTTTCCTGGCCACAGATTACGTCCGGTACAAACCTGTGCTGATTGTCCAGGCGGCCAGCTTCATCGTGACCTATGCTTTGCTCTTGAAGGCCCAGAGTGTGAAAGCCATGCAGTTATTGGAGTTCTTTTTCGGTCTGGCAACTGCCACTGAAGTTGCCTACTACTCCTACATCTACAGTGTGGTGGAGCCATCTCATTATCAGAGGGCGACCGGTTTTTGTCGCAGTGTCACACTGTTGGGCTCAGCGATCGGCTCGCTCATTGGACAGATTCTGGTGTCTGTAGCCCAGGTGCCTCTGTTTTACTTGGGCGTCATCACACTGGTGTCCTCCTGCATAGCCTTTGTTGCCCCTTGGTTCCTACCCATGCCCAGTAAGAGCCTGTTCTTTCATCACAGAGAGAGCTGCTCTCAGGATGAAGGAGCTTTGGAGCCCATTAACGGCAGTCAGCTGATCGAGAAACCAGAGGATCCAGAGTCCAAAATACAGCTTAGTGCAAACGAAAAAACGACTCTCAAGAAGAATATTAGCAGTAGTGGATTCCTGGAGGTTTTAAAAACGCTGTGGTCAGACTTCCTTGAGTGTTACTCCTGCTCTACCCTGTTGGCCTGGTCAGTGTGGTGGGCTTTATCCACGTGTGGTTACCTCCAGGTGATTAATTATGCTCAAGCGCTGTGGCAGAAAATCTTGCCTTCCAATGACTTTGAGATCTACAATGGATACGTGGAGACCGTTTCTACCTTGCTTGGCGCTTTAACAGCATTTGCTGTAGGCTTTCTAAAAGTGTCCTGGGCAGTGTGGGGAGAGCTTgctctctgtgttttctctgtggtAATAGCAGCGTGTGTGTACCTCATGGACACCATCAGAAATATCTGGGTTTGCTACACTTCCTACATGCTCTTCAGAGCTACCTACATGCTTCTTATCACCATAGCAACgTATCAGATAGCTGCTAACCTAAGCATGAGAAGATACGCTTTAGTTTTTGGAGTAAATACTTTCATCGCACTCTTACTGCAGACGACTCTTACCGTGATCGTAGTAGATTCTGCCGGTCTAGGCCTGGACATTTTTCTACAGTTTCTGATCTATGCAAGTTACTTTGCTGTAATAGCTGTGATATTCTTGATTGCCTGGCTGTATAAGTGGTTTAAAAGAAGGGGGCCTGAAGGACAGAATGAATTGCCCTCAACAGAAACGATTCCAGaggcttgaaaaaaaaaaacaaatcttccGTTCAACTCAATGGATAGGTCAAAATAACTGCTTCTAAAGAGAATGCAGCATCTCAAATTCAGAGACTCAGTTTTGAAGGTTATAAAAGCACTGGTGATTTTTGATAACAGTTAATAGTTATACACTGTAAGTTGTTGTAGAACGAAATGcacttgttttaatgtttcattcacATCATTATGATGCCTTACTTCACTGTTAGTTGAATCGAAGCAGGTCAGAATAAGTAGGCTGACTTTTTAAGCCAACACTATCATGTTATGAATATTATGAACTTTATAAGCGCTTGTTAAAATCGGccgtctttttttgttttaccgCTGAAACATTAGCAGAGTTATGGTACTTCCACTACAAATGATCTTTTTTCACACACACGACAGCACAAATGtgattgtgatatttttatacaaCTGTTTTATCAGGAAAAAAGATGATGGTATATAACATTTCGTTTCTTTATTTGTGGTCTGTCGAGAAAAGTAGCTCCGAAAGAAGCGATGAAACCATCGTTTTTCCTCTTTGTGCAACCCAAAAGTAGTATGATTTTGttggaaaaaaagattaattgacCAAATCAAACAGACATTCTTGTTATCAATCAAATCCGAGGAACAAAACTAATGTTGTATAACTTTGCAACGGTTTATCTTGCTGCGCTGCTGGccttaaatgataaaatatctaaaagtatAAGTGGCCTTAGTTTTGTTGGTCATTCCATCTCTTTTATTGGCCgcactttatttttactactATTTCTGTCCCAAgtttttatttgctgcttattaatatttagtaaggtagttaagtttagggaTAGGTAGGATCAAGTGATCCAATACATTCTTATATCAGCcagtgttttaattaataatgacaatTGGTCCttggaaaaaaagtgttaccatcttatttaatgcatttatttaaaaaaggcactGAATTTACAAATAAAGATGAAGGCTTTTGTGTGCTTACTGAA

Function

symbol description
slc19a2 Predicted to enable thiamine transmembrane transporter activity. Predicted to be involved in thiamine transport and transmembrane transport. Predicted to act upstream of or within vitamin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in diabetes mellitus; megaloblastic anemia; and thiamine-responsive megaloblastic anemia syndrome. Orthologous to human SLC19A2 (solute carrier family 19 member 2).

NR:

description
PREDICTED: thiamine transporter 1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K14610 SLC19A2_3, THTR; solute carrier family 19 (thiamine transporter), member 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241865.1 True 2526 mRNA 0.42 6 7254864 7260771
XM_043241866.1 False 2418 mRNA 0.41 6 7254864 7260641

Neighbor

gene id symbol gene type direction distance location
faimb faimb,LOC107709569,LOC107586372,LOC107688905,LOC107677619,LOC107562225 coding downstream 6748 7246256 ~ 7248116 (-)
ackr3b ackr3b,LOC107709570,LOC107586318,LOC107688828,LOC107677631,LOC107748917,LOC107596319 coding downstream 199018 7051184 ~ 7055846 (-)
mlpha mlpha,mlph,LOC107748571,LOC107586370,LOC107688909,LOC107596317,LOC107677617 coding downstream 234949 7010883 ~ 7019915 (-)
lrrfip1b lrrfip1b,LOC107688829,LOC107677622,LOC107596315,LOC107738309,LOC107748528,LOC107586315 coding downstream 244369 6983245 ~ 7010495 (-)
st6gal2b LOC107748529,LOC107688830,LOC107559923,LOC107738307,LOC107596313,LOC107677626 coding downstream 283251 6956132 ~ 6971613 (-)
psmb3 psmb3,LOC107688824,LOC102792592 coding upstream 8500 7269271 ~ 7272477 (-)
LOC122347322 zgc:162999,LOC107586326,LOC107562228,LOC107688822,LOC108438154,LOC107709582,LOC107677632,LOC107719292 coding upstream 72252 7333023 ~ 7337888 (-)
col18a1b LOC107709584,LOC107586328,LOC107688819 coding upstream 95577 7356348 ~ 7382805 (-)
LOC122346455 tns1a,LOC107688818,LOC107709585,LOC107562221,LOC107663075,LOC107586330,LOC107719294 coding upstream 124948 7385719 ~ 7388299 (-)
tns1a tns1a,LOC107688818,LOC107709585,LOC107663075,LOC107719294,LOC107586330 coding upstream 347702 7608473 ~ 7659200 (-)
G43251 NA non-coding downstream 431843 6815260 ~ 6823021 (-)
G43161 NA non-coding downstream 771471 5995956 ~ 6483393 (-)
G43173 NA non-coding downstream 1231354 6018440 ~ 6023510 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding downstream 1499400 5747766 ~ 5755464 (-)
LOC122346635 NA non-coding downstream 1507470 5745439 ~ 5747394 (-)
G43472 NA non-coding upstream 169007 7429778 ~ 7430446 (-)
G43478 NA non-coding upstream 200420 7461191 ~ 7498435 (-)
G43516 NA non-coding upstream 537353 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 595694 7856465 ~ 7857596 (-)
G43513 LOC107688815 non-coding upstream 788626 8049397 ~ 8050678 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other downstream 9685 7108162 ~ 7245179 (-)
trim63a trim63a,murf1,LOC107586317,LOC105896535 other downstream 227437 7001115 ~ 7027427 (-)
G43248 pou3f3b,LOC107688836,LOC107559920,LOC107660107,LOC106574614 other downstream 427136 6804058 ~ 6827728 (-)
cacnb4b cacnb4b,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 other downstream 729914 6041876 ~ 6524950 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other upstream 14069 7274840 ~ 7314774 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other upstream 56176 7316947 ~ 7329565 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other upstream 319124 7579895 ~ 7586367 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other upstream 476319 7737090 ~ 7770451 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other upstream 786331 8047102 ~ 8048008 (-)

Expression


Co-expression Network